Variant report

Variant	rs13265515
Chromosome Location	chr8:51535368-51535369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10107585	0.91[CEU][hapmap]
rs11785733	0.84[CHB][hapmap]
rs12542270	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12542272	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12543580	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12547661	0.91[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap]
rs13262667	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13263870	0.81[AFR][1000 genomes]
rs1351482	0.93[JPT][hapmap];0.86[YRI][hapmap]
rs1384828	0.89[AFR][1000 genomes]
rs1483637	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1483640	0.95[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs1483646	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1601125	0.81[CEU][hapmap]
rs16915097	0.84[AFR][1000 genomes]
rs2392704	0.85[CEU][hapmap]
rs4873466	0.86[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs4873468	0.91[CEU][hapmap]
rs6987557	0.95[CEU][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs6988032	0.95[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs6999996	0.91[CEU][hapmap]
rs7009058	0.86[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs9298341	0.90[CEU][hapmap]
rs9298342	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51529400-51538800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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