Variant report

Variant	rs1483637
Chromosome Location	chr8:51533206-51533207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10107585	0.82[CEU][hapmap]
rs11785733	0.88[CHB][hapmap]
rs12542270	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12542272	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12543580	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12547661	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap]
rs13262667	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13263870	0.81[AFR][1000 genomes]
rs13265515	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1351482	0.86[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1384828	0.89[AFR][1000 genomes]
rs1384830	0.94[ASW][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap]
rs1483640	0.94[ASW][hapmap];0.90[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1483646	1.00[ASW][hapmap];0.91[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.92[LWK][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16915097	0.84[AFR][1000 genomes]
rs2392704	0.87[TSI][hapmap]
rs4873466	1.00[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873468	0.82[CEU][hapmap]
rs6473253	0.89[ASW][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap]
rs6987557	0.90[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6988032	0.90[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs6999996	0.82[CEU][hapmap]
rs7009058	0.95[CEU][hapmap];0.88[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9298341	0.82[CEU][hapmap]
rs9298342	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51529400-51538800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51533000-51534200	Enhancers	HUVEC	blood vessel

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