Variant report

Variant	rs13267437
Chromosome Location	chr8:4196066-4196067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10112705	1.00[ASN][1000 genomes]
rs10113790	1.00[ASN][1000 genomes]
rs10503255	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs11776532	0.81[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs11778035	1.00[ASN][1000 genomes]
rs11785309	1.00[ASN][1000 genomes]
rs11984458	1.00[ASN][1000 genomes]
rs12334940	0.81[YRI][hapmap]
rs12541979	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs13264536	1.00[ASN][1000 genomes]
rs13266349	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504753	1.00[ASN][1000 genomes]
rs1566860	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs1995537	1.00[ASN][1000 genomes]
rs2036549	1.00[ASN][1000 genomes]
rs2134951	1.00[ASN][1000 genomes]
rs2897795	1.00[ASN][1000 genomes]
rs34470235	1.00[ASN][1000 genomes]
rs34965178	1.00[ASN][1000 genomes]
rs34979707	1.00[ASN][1000 genomes]
rs35460033	1.00[ASN][1000 genomes]
rs35520010	1.00[ASN][1000 genomes]
rs35595866	1.00[ASN][1000 genomes]
rs35922761	1.00[ASN][1000 genomes]
rs4875335	1.00[ASN][1000 genomes]
rs71523628	1.00[ASN][1000 genomes]
rs905762	1.00[ASN][1000 genomes]
rs9314524	1.00[ASN][1000 genomes]
rs9314528	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv438021	chr8:4185750-4196180	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13267437	ANGPT2	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4190000-4199600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:4194200-4202600	Weak transcription	Pancreas	Pancrea
3	chr8:4194400-4197000	Enhancers	Fetal Intestine Large	intestine
4	chr8:4194600-4196400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr8:4194600-4197400	Enhancers	Liver	Liver
6	chr8:4194800-4196400	Weak transcription	Stomach Mucosa	stomach
7	chr8:4194800-4202600	Weak transcription	Gastric	stomach
8	chr8:4195200-4199200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:4195400-4196800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr8:4195800-4196200	Weak transcription	Fetal Intestine Small	intestine
11	chr8:4196000-4196400	Weak transcription	Rectal Mucosa Donor 29	rectum

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