Variant report

Variant	rs71523628
Chromosome Location	chr8:4202738-4202739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10112705	1.00[ASN][1000 genomes]
rs10113790	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503255	1.00[ASN][1000 genomes]
rs11776532	0.82[AMR][1000 genomes]
rs11778035	1.00[ASN][1000 genomes]
rs11785309	1.00[ASN][1000 genomes]
rs11984458	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541979	1.00[ASN][1000 genomes]
rs13264536	1.00[ASN][1000 genomes]
rs13266349	1.00[ASN][1000 genomes]
rs13267437	1.00[ASN][1000 genomes]
rs1504753	1.00[ASN][1000 genomes]
rs1566860	1.00[ASN][1000 genomes]
rs1995537	1.00[ASN][1000 genomes]
rs2036549	1.00[ASN][1000 genomes]
rs2134951	1.00[ASN][1000 genomes]
rs2897795	1.00[ASN][1000 genomes]
rs34470235	1.00[ASN][1000 genomes]
rs34965178	1.00[ASN][1000 genomes]
rs34979707	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35460033	1.00[ASN][1000 genomes]
rs35520010	1.00[ASN][1000 genomes]
rs35595866	1.00[ASN][1000 genomes]
rs35922761	1.00[ASN][1000 genomes]
rs4875335	1.00[ASN][1000 genomes]
rs6558867	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs905762	1.00[ASN][1000 genomes]
rs9314524	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv465375	chr8:4201459-4251284	Weak transcription Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv609846	chr8:4201459-4251284	Enhancers Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4201600-4203000	Enhancers	Stomach Mucosa	stomach
2	chr8:4201800-4203200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:4202600-4202800	Enhancers	Gastric	stomach
4	chr8:4202600-4202800	Enhancers	Pancreas	Pancrea

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