Variant report

Variant	rs34979707
Chromosome Location	chr8:4200054-4200055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10112705	1.00[ASN][1000 genomes]
rs10113790	1.00[ASN][1000 genomes]
rs10503255	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776532	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11778035	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785309	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11984458	1.00[ASN][1000 genomes]
rs12541979	1.00[ASN][1000 genomes]
rs13264536	1.00[ASN][1000 genomes]
rs13266349	1.00[ASN][1000 genomes]
rs13267437	1.00[ASN][1000 genomes]
rs1504753	1.00[ASN][1000 genomes]
rs1566860	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995537	1.00[ASN][1000 genomes]
rs2036549	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134951	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2897795	1.00[ASN][1000 genomes]
rs34470235	1.00[ASN][1000 genomes]
rs34965178	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35460033	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35520010	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35595866	1.00[ASN][1000 genomes]
rs35922761	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4875335	1.00[ASN][1000 genomes]
rs71523628	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs905762	1.00[ASN][1000 genomes]
rs9314524	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4194200-4202600	Weak transcription	Pancreas	Pancrea
2	chr8:4194800-4202600	Weak transcription	Gastric	stomach
3	chr8:4199000-4200600	Enhancers	Dnd41	blood
4	chr8:4199200-4201800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:4199800-4200800	Enhancers	Stomach Mucosa	stomach

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