Variant report

Variant	rs13270908
Chromosome Location	chr8:103351771-103351772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103349672..103352405-chr8:103667147..103669229,2	MCF-7	breast:
2	chr8:103345864..103348308-chr8:103350540..103352268,2	MCF-7	breast:
3	chr8:103351534..103353891-chr8:103354616..103356190,2	K562	blood:
4	chr8:103343757..103347850-chr8:103350455..103353849,3	MCF-7	breast:
5	chr8:103351132..103353034-chr8:103354690..103357157,2	K562	blood:

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10505020	0.87[EUR][1000 genomes]
rs13248603	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13249865	0.87[EUR][1000 genomes]
rs13250998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13259151	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13261528	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13262662	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13263132	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13269311	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13278798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13278875	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2061299	0.87[EUR][1000 genomes]
rs28927991	0.90[EUR][1000 genomes]
rs28999669	0.89[EUR][1000 genomes]
rs34270914	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34278087	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34279135	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34297513	0.92[EUR][1000 genomes]
rs34351006	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34356268	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34730203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34976508	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35166521	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35316247	0.93[EUR][1000 genomes]
rs35558370	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35873559	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35969173	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35980679	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36178006	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4483125	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56003023	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59572423	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71518852	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71518861	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71518862	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7845877	0.88[EUR][1000 genomes]
rs9650000	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9650001	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9650002	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1018990	chr8:103207922-103357742	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv539702	chr8:103207922-103357742	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv528486	chr8:103279922-103373304	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103325600-103358200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:103326000-103354000	Weak transcription	Lung	lung
3	chr8:103330000-103375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:103335400-103355000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:103335400-103360000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:103335400-103361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:103335400-103361400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:103335400-103363400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr8:103335400-103363800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:103335400-103373200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr8:103335400-103373400	Strong transcription	Fetal Thymus	thymus
12	chr8:103335400-103373600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:103335800-103355800	Strong transcription	GM12878-XiMat	blood
14	chr8:103335800-103370200	Strong transcription	Dnd41	blood
15	chr8:103336000-103352200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:103336400-103353200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:103337000-103380000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:103339400-103359000	Weak transcription	Spleen	Spleen
19	chr8:103339600-103354000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:103339600-103359000	Weak transcription	Colonic Mucosa	Colon
21	chr8:103340800-103354000	Weak transcription	Right Ventricle	heart
22	chr8:103340800-103357600	Weak transcription	HSMMtube	muscle
23	chr8:103340800-103379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:103341400-103354000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr8:103341400-103355600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:103342000-103352800	Weak transcription	Brain Germinal Matrix	brain
27	chr8:103342200-103352400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:103342200-103357200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr8:103342200-103357600	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:103344200-103352600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:103344200-103361400	Weak transcription	Right Atrium	heart
32	chr8:103344200-103373400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:103344400-103352200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:103344400-103352400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:103344600-103364800	Weak transcription	Fetal Heart	heart
36	chr8:103344800-103357400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr8:103344800-103357600	Weak transcription	Esophagus	oesophagus
38	chr8:103345000-103352000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:103345000-103352400	Weak transcription	Fetal Brain Male	brain
40	chr8:103345000-103353600	Weak transcription	NHLF	lung
41	chr8:103345000-103354000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:103345200-103352600	Weak transcription	Fetal Brain Female	brain
43	chr8:103345200-103354000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr8:103345200-103354200	Weak transcription	Left Ventricle	heart
45	chr8:103345200-103357000	Weak transcription	Fetal Kidney	kidney
46	chr8:103345200-103357400	Weak transcription	Ovary	ovary
47	chr8:103345400-103352000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:103345400-103352200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr8:103345400-103352600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr8:103345400-103354000	Weak transcription	Thymus	Thymus

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