Variant report

Variant	rs35873559
Chromosome Location	chr8:103366317-103366318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103358844..103361635-chr8:103364842..103366470,2	K562	blood:
2	chr8:103366046..103370520-chr8:103377083..103381143,4	MCF-7	breast:
3	chr8:103365478..103368014-chr8:103369535..103374072,4	MCF-7	breast:
4	chr8:103364849..103366619-chr8:103423307..103426264,2	MCF-7	breast:
5	chr8:103347792..103350776-chr8:103364956..103367874,2	K562	blood:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10505020	0.86[EUR][1000 genomes]
rs10955287	1.00[AFR][1000 genomes]
rs13248603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13249865	0.85[EUR][1000 genomes]
rs13250998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13259151	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13261528	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262662	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13263132	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13269311	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13270908	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13278798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13278875	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061299	0.85[EUR][1000 genomes]
rs28927991	0.88[EUR][1000 genomes]
rs28999669	0.88[EUR][1000 genomes]
rs34270914	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34278087	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34279135	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34297513	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34351006	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34356268	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34730203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34976508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35166521	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35316247	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35558370	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35969173	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35980679	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36178006	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3899035	1.00[ASN][1000 genomes]
rs4483125	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003023	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56280439	1.00[ASN][1000 genomes]
rs59572423	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71518852	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71518861	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71518862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72681131	1.00[ASN][1000 genomes]
rs72681134	1.00[ASN][1000 genomes]
rs72681136	1.00[ASN][1000 genomes]
rs72681138	1.00[ASN][1000 genomes]
rs7845877	0.86[EUR][1000 genomes]
rs9650000	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9650001	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9650002	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv528486	chr8:103279922-103373304	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103330000-103375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103335400-103373200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:103335400-103373400	Strong transcription	Fetal Thymus	thymus
4	chr8:103335400-103373600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:103335800-103370200	Strong transcription	Dnd41	blood
6	chr8:103337000-103380000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:103340800-103379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:103344200-103373400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:103345400-103372000	Weak transcription	Small Intestine	intestine
10	chr8:103345400-103379800	Weak transcription	Aorta	Aorta
11	chr8:103346400-103373200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:103347400-103373400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:103348000-103373400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr8:103350000-103366400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:103353800-103373000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:103354000-103378400	Weak transcription	Fetal Brain Male	brain
17	chr8:103355000-103371000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:103355000-103379400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr8:103355000-103379400	Weak transcription	Psoas Muscle	Psoas
20	chr8:103355000-103379600	Weak transcription	Right Ventricle	heart
21	chr8:103355000-103380600	Weak transcription	Brain Angular Gyrus	brain
22	chr8:103355400-103373600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:103356600-103366400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:103356600-103373200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:103357000-103370000	Strong transcription	Fetal Intestine Large	intestine
26	chr8:103357400-103372200	Strong transcription	GM12878-XiMat	blood
27	chr8:103357800-103371200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr8:103358600-103369200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:103359200-103371200	Weak transcription	Fetal Kidney	kidney
30	chr8:103359200-103374600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:103359400-103367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:103359400-103369200	Weak transcription	Colonic Mucosa	Colon
33	chr8:103359400-103371000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr8:103359400-103375200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr8:103359600-103367000	Weak transcription	Ovary	ovary
36	chr8:103359800-103367000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:103359800-103367000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr8:103359800-103367200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr8:103359800-103368400	Weak transcription	HSMMtube	muscle
40	chr8:103359800-103368600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr8:103359800-103369200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:103359800-103369200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr8:103359800-103369200	Weak transcription	HMEC	breast
44	chr8:103359800-103369200	Weak transcription	NHEK	skin
45	chr8:103359800-103370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:103359800-103371000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:103359800-103371000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr8:103359800-103377800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:103359800-103379400	Weak transcription	Pancreas	Pancrea
50	chr8:103359800-103380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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