Variant report

Variant	rs10955287
Chromosome Location	chr8:103420005-103420006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103411798..103414097-chr8:103416318..103420383,4	MCF-7	breast:
2	chr8:103373349..103376226-chr8:103418775..103421035,2	K562	blood:
3	chr8:103396157..103398817-chr8:103419395..103421018,2	MCF-7	breast:
4	chr8:103419173..103421131-chr8:103596356..103598613,2	MCF-7	breast:
5	chr8:103401111..103403412-chr8:103418397..103420245,2	K562	blood:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10955286	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11369820	1.00[ASN][1000 genomes]
rs13248603	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249355	1.00[ASN][1000 genomes]
rs13250998	1.00[AFR][1000 genomes]
rs13262857	1.00[ASN][1000 genomes]
rs13263132	1.00[AFR][1000 genomes]
rs13268883	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269311	1.00[AFR][1000 genomes]
rs13271493	1.00[ASN][1000 genomes]
rs13278798	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34078231	1.00[ASN][1000 genomes]
rs34270914	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278087	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34676997	1.00[ASN][1000 genomes]
rs34730203	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34913297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34976508	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35166521	1.00[AFR][1000 genomes]
rs35655607	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35873559	1.00[AFR][1000 genomes]
rs35969173	1.00[AFR][1000 genomes]
rs55804830	1.00[ASN][1000 genomes]
rs56003023	1.00[AFR][1000 genomes]
rs59572423	1.00[ASN][1000 genomes]
rs71506353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71518862	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71518868	1.00[ASN][1000 genomes]
rs9650000	1.00[AFR][1000 genomes]
rs9650001	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
2	chr8:103395800-103420800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:103395800-103422200	Weak transcription	HSMMtube	muscle
4	chr8:103397400-103420800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:103398600-103420800	Weak transcription	Esophagus	oesophagus
6	chr8:103403400-103423000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:103407600-103421000	Weak transcription	Spleen	Spleen
8	chr8:103408400-103421000	Weak transcription	Thymus	Thymus
9	chr8:103408400-103422400	Weak transcription	Small Intestine	intestine
10	chr8:103408800-103422000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:103410000-103420200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:103410600-103422400	Weak transcription	Fetal Kidney	kidney
13	chr8:103410800-103422800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:103411000-103420800	Weak transcription	Fetal Stomach	stomach
15	chr8:103412000-103420800	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:103412800-103423200	Weak transcription	Lung	lung
17	chr8:103413200-103422000	Weak transcription	Fetal Intestine Large	intestine
18	chr8:103413800-103420800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:103414000-103421000	Weak transcription	Gastric	stomach
20	chr8:103414000-103422000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:103414000-103423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:103414600-103421000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:103414600-103422000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:103415000-103420200	Weak transcription	Fetal Brain Male	brain
25	chr8:103415000-103420600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:103415200-103420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:103415400-103420600	Weak transcription	Fetal Brain Female	brain
28	chr8:103415600-103422400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr8:103416000-103422400	Enhancers	Adipose Nuclei	Adipose
30	chr8:103416200-103421000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr8:103416400-103420200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:103416400-103420400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr8:103416400-103420600	Weak transcription	Brain Substantia Nigra	brain
34	chr8:103416400-103420800	Weak transcription	Liver	Liver
35	chr8:103416800-103420800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr8:103417000-103420400	Weak transcription	HMEC	breast
37	chr8:103417000-103422000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:103417000-103422000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:103417200-103420200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:103417200-103421000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:103417200-103421000	Weak transcription	Pancreas	Pancrea
42	chr8:103417200-103422400	Weak transcription	Aorta	Aorta
43	chr8:103417400-103422400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr8:103417600-103420800	Weak transcription	Brain Germinal Matrix	brain
45	chr8:103417800-103420200	Weak transcription	A549	lung
46	chr8:103417800-103420600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:103417800-103420800	Weak transcription	Placenta	Placenta
48	chr8:103417800-103421000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:103418000-103420200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr8:103418000-103420800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links