Variant report

Variant	rs34913297
Chromosome Location	chr8:103410733-103410734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103409780..103414303-chr8:103416833..103419035,4	MCF-7	breast:
2	chr8:103406201..103411480-chr8:103421779..103426135,6	MCF-7	breast:
3	chr8:103407714..103410047-chr8:103410343..103411867,2	MCF-7	breast:
4	chr8:103398120..103402730-chr8:103407201..103410943,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction
ENSG00000238533	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10955286	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11369820	1.00[ASN][1000 genomes]
rs13248603	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249355	1.00[ASN][1000 genomes]
rs13262857	1.00[ASN][1000 genomes]
rs13268883	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271493	1.00[ASN][1000 genomes]
rs13278798	1.00[ASN][1000 genomes]
rs34078231	1.00[ASN][1000 genomes]
rs34270914	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278087	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34676997	1.00[ASN][1000 genomes]
rs34730203	1.00[ASN][1000 genomes]
rs34976508	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35655607	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55804830	1.00[ASN][1000 genomes]
rs56383668	0.85[AFR][1000 genomes]
rs59572423	1.00[ASN][1000 genomes]
rs71506353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71518862	1.00[ASN][1000 genomes]
rs71518868	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv2761454	chr8:103394602-103414235	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
2	chr8:103372400-103412600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:103384200-103411600	Weak transcription	Lung	lung
4	chr8:103384200-103416800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:103388400-103416600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:103395800-103420800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:103395800-103422200	Weak transcription	HSMMtube	muscle
8	chr8:103397000-103413600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:103397400-103420800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:103398600-103420800	Weak transcription	Esophagus	oesophagus
11	chr8:103400800-103414800	Weak transcription	HUVEC	blood vessel
12	chr8:103403400-103412400	Weak transcription	Dnd41	blood
13	chr8:103403400-103412400	Weak transcription	NHEK	skin
14	chr8:103403400-103413600	Weak transcription	Gastric	stomach
15	chr8:103403400-103416800	Weak transcription	Placenta	Placenta
16	chr8:103403400-103420000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:103403400-103423000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:103404000-103412200	Weak transcription	Hela-S3	cervix
19	chr8:103404400-103413000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:103404400-103416200	Weak transcription	NHLF	lung
21	chr8:103405000-103416000	Weak transcription	NHDF-Ad	bronchial
22	chr8:103405200-103414800	Weak transcription	Osteobl	bone
23	chr8:103407000-103417000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr8:103407200-103415000	Weak transcription	NH-A	brain
25	chr8:103407400-103412600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:103407400-103415000	Weak transcription	HMEC	breast
27	chr8:103407600-103412400	Weak transcription	Pancreas	Pancrea
28	chr8:103407600-103413600	Weak transcription	Right Atrium	heart
29	chr8:103407600-103415400	Weak transcription	Aorta	Aorta
30	chr8:103407600-103421000	Weak transcription	Spleen	Spleen
31	chr8:103408000-103412400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:103408000-103413000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:103408200-103413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:103408200-103413200	Weak transcription	Brain Angular Gyrus	brain
35	chr8:103408200-103413600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr8:103408400-103412400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:103408400-103413000	Weak transcription	Right Ventricle	heart
38	chr8:103408400-103413600	Weak transcription	Left Ventricle	heart
39	chr8:103408400-103413800	Weak transcription	Brain Hippocampus Middle	brain
40	chr8:103408400-103421000	Weak transcription	Thymus	Thymus
41	chr8:103408400-103422400	Weak transcription	Small Intestine	intestine
42	chr8:103408600-103411600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr8:103408600-103411800	Weak transcription	Primary B cells from cord blood	blood
44	chr8:103408600-103412200	Weak transcription	Liver	Liver
45	chr8:103408600-103412600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:103408600-103412600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr8:103408600-103412600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr8:103408600-103412600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr8:103408600-103412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr8:103408600-103412800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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