Variant report

Variant	rs13268883
Chromosome Location	chr8:103438838-103438839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103437958..103439977-chr8:103547146..103549346,2	MCF-7	breast:
2	chr8:103438828..103441825-chr8:103444770..103446415,2	K562	blood:
3	chr8:103436468..103438019-chr8:103438186..103439850,2	MCF-7	breast:
4	chr8:103423487..103426475-chr8:103434896..103439733,5	MCF-7	breast:
5	chr8:103436437..103439478-chr8:103450415..103454144,3	MCF-7	breast:
6	chr8:103427417..103430213-chr8:103437783..103440651,2	MCF-7	breast:
7	chr8:103422249..103427924-chr8:103438177..103442198,4	K562	blood:

Variant related genes	Relation type
ENSG00000253923	Chromatin interaction
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10955286	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955287	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11369820	1.00[ASN][1000 genomes]
rs13248603	1.00[ASN][1000 genomes]
rs13249355	1.00[ASN][1000 genomes]
rs13262857	1.00[ASN][1000 genomes]
rs13271493	1.00[ASN][1000 genomes]
rs13278798	1.00[ASN][1000 genomes]
rs34078231	1.00[ASN][1000 genomes]
rs34270914	1.00[ASN][1000 genomes]
rs34278087	1.00[ASN][1000 genomes]
rs34676997	1.00[ASN][1000 genomes]
rs34730203	1.00[ASN][1000 genomes]
rs34913297	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34976508	1.00[ASN][1000 genomes]
rs35655607	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55804830	1.00[ASN][1000 genomes]
rs59572423	1.00[ASN][1000 genomes]
rs71506353	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71518862	1.00[ASN][1000 genomes]
rs71518868	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103425800-103439600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:103425800-103439600	Weak transcription	Fetal Stomach	stomach
3	chr8:103426200-103439600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:103430600-103444400	Weak transcription	GM12878-XiMat	blood
5	chr8:103436800-103439400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:103437200-103440400	Enhancers	HepG2	liver
7	chr8:103438400-103439400	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:103438600-103449200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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