Variant report

Variant	rs35655607
Chromosome Location	chr8:103424808-103424809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:45987491..45990463-chr8:103421927..103424903,2	MCF-7	breast:
2	chr8:103423355..103425914-chr8:103664541..103666736,4	MCF-7	breast:
3	chr8:103421430..103426226-chr8:103872960..103876390,5	K562	blood:
4	chr8:103371293..103374711-chr8:103423320..103425587,3	K562	blood:
5	chr8:101961253..101963473-chr8:103423229..103424964,2	MCF-7	breast:
6	chr8:103273290..103276043-chr8:103422341..103425463,3	MCF-7	breast:
7	chr8:103422495..103425381-chr8:103875147..103876814,2	MCF-7	breast:
8	chr8:103422090..103425844-chr8:103540841..103544782,4	MCF-7	breast:
9	chr8:103422007..103426020-chr8:103666229..103670037,6	K562	blood:
10	chr8:103421569..103424868-chr8:103447011..103449629,3	MCF-7	breast:
11	chr8:103250055..103252401-chr8:103423281..103425578,3	K562	blood:
12	chr8:103420136..103427906-chr8:103815410..103825210,22	MCF-7	breast:
13	chr8:103422749..103426860-chr8:103874401..103878662,6	MCF-7	breast:
14	chr8:103422537..103425322-chr8:103540234..103542841,3	K562	blood:
15	chr17:56707832..56709571-chr8:103422818..103425286,2	MCF-7	breast:
16	chr8:103400271..103401857-chr8:103422976..103425727,2	MCF-7	breast:
17	chr8:103422537..103426688-chr8:103540100..103542473,3	K562	blood:
18	chr8:103420666..103426323-chr8:103664417..103668286,11	K562	blood:
19	chr8:103423160..103425899-chr8:103539167..103542509,5	MCF-7	breast:
20	chr8:103359154..103362889-chr8:103423110..103427139,3	K562	blood:
21	chr1:62207014..62208687-chr8:103424188..103425708,2	MCF-7	breast:
22	chr5:74632034..74632846-chr8:103424779..103425435,2	Hela-S3	cervix:
23	chr8:103423558..103425413-chr8:104426002..104428087,2	MCF-7	breast:
24	chr12:53773983..53774648-chr8:103424425..103425352,2	HCT-116	colon:
25	chr8:103283674..103286136-chr8:103423497..103425082,2	MCF-7	breast:
26	chr8:103423071..103424843-chr8:103817018..103819955,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000164933	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000132849	Chromatin interaction
ENSG00000246263	Chromatin interaction
ENSG00000104517	Chromatin interaction
ENSG00000238533	Chromatin interaction
ENSG00000164924	Chromatin interaction
ENSG00000048392	Chromatin interaction
ENSG00000155096	Chromatin interaction
ENSG00000247372	Chromatin interaction
ENSG00000271200	Chromatin interaction
ENSG00000253669	Chromatin interaction
ENSG00000113161	Chromatin interaction
ENSG00000253633	Chromatin interaction
ENSG00000185591	Chromatin interaction
ENSG00000164934	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10955286	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955287	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11369820	1.00[ASN][1000 genomes]
rs13248603	1.00[ASN][1000 genomes]
rs13249355	1.00[ASN][1000 genomes]
rs13262857	1.00[ASN][1000 genomes]
rs13268883	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271493	1.00[ASN][1000 genomes]
rs13278798	1.00[ASN][1000 genomes]
rs34078231	1.00[ASN][1000 genomes]
rs34270914	1.00[ASN][1000 genomes]
rs34278087	1.00[ASN][1000 genomes]
rs34676997	1.00[ASN][1000 genomes]
rs34730203	1.00[ASN][1000 genomes]
rs34913297	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34976508	1.00[ASN][1000 genomes]
rs55804830	1.00[ASN][1000 genomes]
rs59572423	1.00[ASN][1000 genomes]
rs71506353	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71518862	1.00[ASN][1000 genomes]
rs71518868	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv3441759	chr8:103423401-103425949	Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103421600-103425400	Active TSS	H1 Cell Line	embryonic stem cell
2	chr8:103422200-103425400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:103422200-103425400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:103422200-103425800	Active TSS	Fetal Brain Female	brain
5	chr8:103422200-103425800	Active TSS	HMEC	breast
6	chr8:103422200-103426000	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr8:103422400-103425600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:103422400-103425800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:103422400-103425800	Active TSS	NHLF	lung
10	chr8:103422600-103425400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:103422600-103425400	Active TSS	HepG2	liver
12	chr8:103422600-103425600	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr8:103422600-103425600	Active TSS	Right Ventricle	heart
14	chr8:103422600-103425800	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr8:103422600-103425800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:103422600-103425800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:103422600-103425800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:103422600-103425800	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr8:103422600-103425800	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr8:103422800-103425400	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr8:103422800-103425400	Active TSS	Muscle Satellite Cultured Cells	--
22	chr8:103422800-103425400	Active TSS	Colon Smooth Muscle	Colon
23	chr8:103422800-103425400	Active TSS	Esophagus	oesophagus
24	chr8:103422800-103425400	Active TSS	Pancreas	Pancrea
25	chr8:103422800-103425400	Active TSS	Small Intestine	intestine
26	chr8:103422800-103425600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:103422800-103425600	Active TSS	Aorta	Aorta
28	chr8:103422800-103425600	Active TSS	Fetal Muscle Trunk	muscle
29	chr8:103422800-103425600	Active TSS	Left Ventricle	heart
30	chr8:103422800-103425600	Active TSS	Ovary	ovary
31	chr8:103422800-103425800	Active TSS	Stomach Smooth Muscle	stomach
32	chr8:103423000-103425200	Active TSS	Fetal Stomach	stomach
33	chr8:103423000-103425400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:103423000-103425400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:103423000-103425400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:103423000-103425400	Active TSS	Brain Cingulate Gyrus	brain
37	chr8:103423000-103425400	Active TSS	Colonic Mucosa	Colon
38	chr8:103423000-103425400	Active TSS	Fetal Kidney	kidney
39	chr8:103423000-103425600	Active TSS	H9 Cell Line	embryonic stem cell
40	chr8:103423000-103425600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:103423000-103425600	Active TSS	Fetal Intestine Large	intestine
42	chr8:103423000-103425600	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr8:103423000-103425800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
44	chr8:103423000-103425800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:103423000-103425800	Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr8:103423000-103425800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:103423000-103425800	Active TSS	A549	lung
48	chr8:103423000-103426000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:103423200-103425200	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr8:103423200-103425200	Active TSS	Spleen	Spleen

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