Variant report

Variant	rs7845877
Chromosome Location	chr8:103332588-103332589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs13248603	0.82[EUR][1000 genomes]
rs13250998	0.88[EUR][1000 genomes]
rs13259151	0.88[EUR][1000 genomes]
rs13261528	0.88[EUR][1000 genomes]
rs13262662	0.84[EUR][1000 genomes]
rs13263132	0.88[EUR][1000 genomes]
rs13269311	0.88[EUR][1000 genomes]
rs13270908	0.88[EUR][1000 genomes]
rs13278798	0.88[EUR][1000 genomes]
rs13278875	0.88[EUR][1000 genomes]
rs28927991	0.81[EUR][1000 genomes]
rs34270914	0.82[EUR][1000 genomes]
rs34278087	0.82[EUR][1000 genomes]
rs34279135	0.85[EUR][1000 genomes]
rs34297513	0.88[EUR][1000 genomes]
rs34351006	0.86[EUR][1000 genomes]
rs34356268	0.86[EUR][1000 genomes]
rs34730203	0.88[EUR][1000 genomes]
rs34976508	0.82[EUR][1000 genomes]
rs35166521	0.88[EUR][1000 genomes]
rs35316247	0.83[EUR][1000 genomes]
rs35558370	0.86[EUR][1000 genomes]
rs35873559	0.86[EUR][1000 genomes]
rs35969173	0.88[EUR][1000 genomes]
rs35980679	0.83[EUR][1000 genomes]
rs36178006	0.88[EUR][1000 genomes]
rs4483125	0.88[EUR][1000 genomes]
rs56003023	0.88[EUR][1000 genomes]
rs59572423	0.88[EUR][1000 genomes]
rs71518852	0.88[EUR][1000 genomes]
rs71518861	0.85[EUR][1000 genomes]
rs71518862	0.81[EUR][1000 genomes]
rs73283398	0.81[AFR][1000 genomes]
rs7845522	0.89[AFR][1000 genomes]
rs9650000	0.88[EUR][1000 genomes]
rs9650001	0.88[EUR][1000 genomes]
rs9650002	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1018990	chr8:103207922-103357742	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv539702	chr8:103207922-103357742	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv528486	chr8:103279922-103373304	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103300200-103342800	Weak transcription	Stomach Mucosa	stomach
2	chr8:103300200-103343000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:103308000-103338200	Weak transcription	Gastric	stomach
4	chr8:103318200-103338200	Weak transcription	Aorta	Aorta
5	chr8:103319400-103343400	Weak transcription	Small Intestine	intestine
6	chr8:103323600-103338200	Weak transcription	Brain Angular Gyrus	brain
7	chr8:103323800-103338400	Weak transcription	Pancreas	Pancrea
8	chr8:103324200-103339200	Weak transcription	Fetal Kidney	kidney
9	chr8:103324600-103343600	Weak transcription	Fetal Brain Male	brain
10	chr8:103324800-103335600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:103324800-103338200	Weak transcription	Spleen	Spleen
12	chr8:103325000-103335400	Weak transcription	Fetal Heart	heart
13	chr8:103325400-103338400	Weak transcription	Colonic Mucosa	Colon
14	chr8:103325400-103338400	Weak transcription	Psoas Muscle	Psoas
15	chr8:103325600-103338200	Weak transcription	Ovary	ovary
16	chr8:103325600-103358200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:103325800-103338200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:103326000-103335400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:103326000-103335400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:103326000-103336600	Weak transcription	NHDF-Ad	bronchial
21	chr8:103326000-103354000	Weak transcription	Lung	lung
22	chr8:103326200-103335400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:103326200-103335400	Weak transcription	Brain Anterior Caudate	brain
24	chr8:103326200-103336600	Weak transcription	Primary T cells from cord blood	blood
25	chr8:103326200-103337000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:103326200-103337000	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:103326200-103337000	Weak transcription	NHLF	lung
28	chr8:103326200-103337200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr8:103326200-103338000	Weak transcription	HSMMtube	muscle
30	chr8:103326200-103338200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:103326200-103338200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:103326200-103338400	Weak transcription	Right Ventricle	heart
33	chr8:103326200-103339000	Weak transcription	Brain Germinal Matrix	brain
34	chr8:103326400-103335400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr8:103326400-103335400	Weak transcription	Fetal Brain Female	brain
36	chr8:103326400-103335400	Weak transcription	Fetal Lung	lung
37	chr8:103326400-103335400	Weak transcription	Left Ventricle	heart
38	chr8:103326400-103335400	Weak transcription	A549	lung
39	chr8:103326400-103335400	Weak transcription	HepG2	liver
40	chr8:103326400-103336600	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:103326400-103337000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr8:103326400-103337600	Weak transcription	NHEK	skin
43	chr8:103326800-103335400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr8:103326800-103335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr8:103326800-103335400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:103326800-103338200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr8:103326800-103338200	Weak transcription	Brain Substantia Nigra	brain
48	chr8:103326800-103338200	Weak transcription	Hela-S3	cervix
49	chr8:103327000-103335400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr8:103327000-103335400	Weak transcription	Adipose Nuclei	Adipose

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