Variant report

Variant	rs13272688
Chromosome Location	chr8:108503702-108503703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11984986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11991529	0.89[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12678509	0.80[ASN][1000 genomes]
rs13255500	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs13257372	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13263947	0.89[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13264356	0.90[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13265214	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs13276416	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13280030	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs13281824	0.90[ASN][1000 genomes]
rs34145387	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34562665	0.90[ASN][1000 genomes]
rs34612085	0.90[ASN][1000 genomes]
rs6991687	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs71524708	0.90[ASN][1000 genomes]
rs71562145	0.88[ASN][1000 genomes]
rs9650030	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825819	chr8:108495057-108506185	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1832361	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844679	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv611852	chr8:108503702-108505854	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv611853	chr8:108503702-108505986	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
6	nsv611854	chr8:108503702-108506185	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108497600-108504200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:108497800-108508400	Weak transcription	Left Ventricle	heart
3	chr8:108498200-108506800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:108498400-108506800	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:108498400-108507400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:108499000-108506600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:108499400-108507000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:108499600-108506800	Weak transcription	Fetal Thymus	thymus
9	chr8:108499800-108506800	Weak transcription	Aorta	Aorta
10	chr8:108500400-108507200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr8:108501000-108504000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:108501200-108504200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:108501800-108505200	Weak transcription	Fetal Kidney	kidney
14	chr8:108502000-108504000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:108502200-108504200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:108502400-108507600	Weak transcription	Psoas Muscle	Psoas
17	chr8:108502600-108503800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:108502600-108503800	Enhancers	Osteobl	bone
19	chr8:108502600-108504000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:108502600-108506800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:108502800-108503800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr8:108502800-108505400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:108502800-108506400	Weak transcription	NHDF-Ad	bronchial
24	chr8:108502800-108506400	Weak transcription	NHLF	lung
25	chr8:108502800-108506600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:108502800-108506600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr8:108502800-108506600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:108502800-108506600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:108502800-108506600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:108502800-108506600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr8:108502800-108506600	Weak transcription	Brain Germinal Matrix	brain
32	chr8:108502800-108506600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:108502800-108506800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:108502800-108506800	Weak transcription	Fetal Brain Female	brain
35	chr8:108502800-108507000	Weak transcription	Ovary	ovary
36	chr8:108502800-108507200	Weak transcription	A549	lung
37	chr8:108502800-108507600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:108502800-108509200	Weak transcription	NHEK	skin
39	chr8:108503000-108505200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:108503000-108505200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:108503000-108505800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr8:108503000-108506600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:108503000-108506600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:108503000-108506600	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:108503000-108506800	Weak transcription	Adipose Nuclei	Adipose
46	chr8:108503000-108507400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr8:108503000-108508400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:108503200-108505400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:108503200-108506200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:108503400-108504000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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