Variant report

Variant	rs13276416
Chromosome Location	chr8:108471936-108471937
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11984986	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11991529	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12678509	0.82[ASN][1000 genomes]
rs13255500	0.92[ASN][1000 genomes]
rs13257372	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13263947	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13264356	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13265214	0.92[ASN][1000 genomes]
rs13272688	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13280030	0.92[ASN][1000 genomes]
rs13281824	0.92[ASN][1000 genomes]
rs34145387	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34562665	0.92[ASN][1000 genomes]
rs34612085	0.92[ASN][1000 genomes]
rs6991687	0.85[ASN][1000 genomes]
rs71524708	0.92[ASN][1000 genomes]
rs71562145	0.90[ASN][1000 genomes]
rs9650030	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108467200-108473200	Enhancers	NHDF-Ad	bronchial
2	chr8:108467400-108474600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:108468800-108472800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:108470200-108472200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:108470200-108472200	Weak transcription	Fetal Brain Male	brain
6	chr8:108470200-108472200	Weak transcription	Ovary	ovary
7	chr8:108470200-108474400	Weak transcription	Psoas Muscle	Psoas
8	chr8:108470400-108474000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:108470400-108474000	Weak transcription	Aorta	Aorta
10	chr8:108470600-108472000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:108470600-108472200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:108470600-108472200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:108470600-108473800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:108470600-108474200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:108470600-108474200	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:108471000-108472000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:108471000-108472200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:108471000-108474400	Weak transcription	Fetal Kidney	kidney
19	chr8:108471000-108474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:108471200-108472400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:108471200-108472800	Enhancers	Stomach Smooth Muscle	stomach
22	chr8:108471400-108472200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:108471400-108473800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:108471600-108473400	Enhancers	Fetal Lung	lung
25	chr8:108471800-108472400	Enhancers	Osteobl	bone
26	chr8:108471800-108472800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:108471800-108473000	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr8:108471800-108473200	Enhancers	Adipose Nuclei	Adipose
29	chr8:108471800-108473800	Enhancers	NHLF	lung
30	chr8:108471800-108474000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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