Variant report

Variant	rs34145387
Chromosome Location	chr8:108510556-108510557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr8:108508999-108510559	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108510326..108512343-chr8:108512433..108514232,2	K562	blood:

Variant related genes	Relation type
ANGPT1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11984986	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11991529	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13255500	0.88[ASN][1000 genomes]
rs13257372	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13263947	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13264356	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13265214	0.89[ASN][1000 genomes]
rs13272688	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13276416	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13280030	0.89[ASN][1000 genomes]
rs13281824	0.89[ASN][1000 genomes]
rs34562665	0.89[ASN][1000 genomes]
rs34612085	0.89[ASN][1000 genomes]
rs6991687	0.82[ASN][1000 genomes]
rs71524708	0.88[ASN][1000 genomes]
rs71562145	0.86[ASN][1000 genomes]
rs9650030	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611862	chr8:108504907-108513341	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1845767	chr8:108504907-108515373	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1849422	chr8:108504907-108515373	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825455	chr8:108504907-108518274	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108506800-108510600	Active TSS	Stomach Smooth Muscle	stomach
2	chr8:108509200-108510600	Active TSS	Stomach Mucosa	stomach
3	chr8:108509800-108510600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:108509800-108510600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr8:108509800-108510800	Weak transcription	Spleen	Spleen
6	chr8:108509800-108511800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:108510000-108510600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr8:108510000-108510600	Flanking Active TSS	Osteobl	bone
9	chr8:108510000-108511000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr8:108510000-108511800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:108510000-108511800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:108510000-108512000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:108510200-108510600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:108510200-108510600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:108510200-108510600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:108510200-108510600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr8:108510200-108510600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr8:108510200-108511400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:108510200-108511400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr8:108510200-108512000	Weak transcription	Psoas Muscle	Psoas
21	chr8:108510400-108510600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:108510400-108510600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr8:108510400-108510600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr8:108510400-108510600	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr8:108510400-108510600	Active TSS	Primary hematopoietic stem cells	blood
26	chr8:108510400-108510600	Bivalent Enhancer	Brain Germinal Matrix	brain
27	chr8:108510400-108510600	Enhancers	A549	lung
28	chr8:108510400-108510800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr8:108510400-108510800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:108510400-108511200	Weak transcription	Aorta	Aorta
31	chr8:108510400-108511600	Enhancers	Colon Smooth Muscle	Colon
32	chr8:108510400-108511600	Weak transcription	Fetal Kidney	kidney
33	chr8:108510400-108511600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr8:108510400-108511800	Enhancers	Adipose Nuclei	Adipose
35	chr8:108510400-108512000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:108510400-108512000	Weak transcription	Fetal Heart	heart
37	chr8:108510400-108512000	Weak transcription	Right Atrium	heart
38	chr8:108510400-108512000	Enhancers	HSMM	muscle
39	chr8:108510400-108512000	Enhancers	HUVEC	blood vessel
40	chr8:108510400-108512200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:108510400-108512200	Enhancers	Fetal Lung	lung
42	chr8:108510400-108512200	Enhancers	Rectal Smooth Muscle	rectum
43	chr8:108510400-108512200	Enhancers	NH-A	brain
44	chr8:108510400-108512200	Enhancers	NHDF-Ad	bronchial
45	chr8:108510400-108512400	Enhancers	HSMMtube	muscle
46	chr8:108510400-108513600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:108510400-108513800	Enhancers	NHLF	lung
48	chr8:108510400-108514000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:108510400-108515000	Weak transcription	Left Ventricle	heart
50	chr8:108510400-108515200	Weak transcription	Ovary	ovary

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