Variant report

Variant	rs13282495
Chromosome Location	chr8:67163373-67163374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13264895	0.81[EUR][1000 genomes]
rs13266379	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16932707	0.81[EUR][1000 genomes]
rs34338615	0.81[EUR][1000 genomes]
rs35200809	0.81[EUR][1000 genomes]
rs35707268	1.00[AMR][1000 genomes]
rs35742039	1.00[AMR][1000 genomes]
rs35766715	0.81[EUR][1000 genomes]
rs59104426	0.81[EUR][1000 genomes]
rs71515011	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71515013	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv3343837	chr8:67137447-67168780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3327342	chr8:67137447-67171527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3417547	chr8:67162648-67164946	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67162200-67163400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr8:67162600-67164200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:67162600-67164600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:67162800-67164000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:67163200-67164000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links