Variant report

Variant	rs16932707
Chromosome Location	chr8:67187439-67187440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10092687	1.00[CHB][hapmap]
rs10095931	1.00[CHB][hapmap]
rs10101457	1.00[CHB][hapmap]
rs10113208	1.00[CHB][hapmap]
rs12334408	1.00[CHB][hapmap]
rs13264895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278591	0.82[EUR][1000 genomes]
rs13282495	0.81[EUR][1000 genomes]
rs16932461	1.00[CHB][hapmap]
rs16932465	1.00[CHB][hapmap]
rs16932468	1.00[CHB][hapmap]
rs16932544	1.00[CHB][hapmap]
rs16932700	0.82[EUR][1000 genomes]
rs16932705	0.82[EUR][1000 genomes]
rs16932713	0.90[EUR][1000 genomes]
rs28364018	1.00[CHB][hapmap]
rs34328946	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34338615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35200809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35707268	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35742039	0.90[EUR][1000 genomes]
rs35766715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366069	1.00[CHB][hapmap]
rs4495409	1.00[CHB][hapmap]
rs58907751	0.97[EUR][1000 genomes]
rs59104426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60957276	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61160606	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472245	1.00[CHB][hapmap]
rs6472251	1.00[CHB][hapmap]
rs6988195	1.00[CHB][hapmap]
rs7006394	1.00[CHB][hapmap]
rs7008359	1.00[CHB][hapmap]
rs7008578	1.00[CHB][hapmap]
rs71515011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71515013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834423	1.00[CHB][hapmap]
rs7835948	1.00[CHB][hapmap]
rs7845334	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1017345	chr8:67184975-67209954	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67182400-67190000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:67182600-67190200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:67186200-67187600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:67187000-67197200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:67187400-67187800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:67187400-67187800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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