Variant report

Variant	rs61160606
Chromosome Location	chr8:67183387-67183388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13264895	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266379	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278591	0.85[EUR][1000 genomes]
rs16932700	0.85[EUR][1000 genomes]
rs16932705	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16932707	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932713	0.93[EUR][1000 genomes]
rs34328946	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34338615	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35200809	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35707268	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35742039	0.87[EUR][1000 genomes]
rs35766715	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58907751	0.93[EUR][1000 genomes]
rs59104426	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60957276	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71515011	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71515013	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67172600-67186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:67182400-67186400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:67182400-67190000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:67182600-67185600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:67182600-67190200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:67182800-67185400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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