Variant report

Variant	rs16932700
Chromosome Location	chr8:67182109-67182110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13264895	0.82[EUR][1000 genomes]
rs13266379	0.82[EUR][1000 genomes]
rs13278591	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932705	1.00[EUR][1000 genomes]
rs16932707	0.82[EUR][1000 genomes]
rs16932713	0.85[EUR][1000 genomes]
rs34338615	0.82[EUR][1000 genomes]
rs35200809	0.82[EUR][1000 genomes]
rs35766715	0.82[EUR][1000 genomes]
rs59104426	0.82[EUR][1000 genomes]
rs61160606	0.85[EUR][1000 genomes]
rs71515011	0.82[EUR][1000 genomes]
rs71515013	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67172600-67186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:67179800-67182400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:67180400-67182200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:67181000-67182400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:67181400-67182200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:67181400-67182400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:67181400-67182400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:67181600-67182200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:67181600-67182200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:67181800-67182200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:67181800-67182600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:67182000-67182400	Enhancers	Fetal Muscle Leg	muscle
13	chr8:67182000-67182600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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