Variant report
| Variant | rs71515011 |
|---|---|
| Chromosome Location | chr8:67167465-67167466 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13264895 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13266379 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13278591 | 0.82[EUR][1000 genomes] |
| rs13282495 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs16932700 | 0.82[EUR][1000 genomes] |
| rs16932705 | 0.82[EUR][1000 genomes] |
| rs16932707 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16932713 | 0.90[EUR][1000 genomes] |
| rs34328946 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34338615 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35200809 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35707268 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35742039 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35766715 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58907751 | 0.97[EUR][1000 genomes] |
| rs59104426 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60957276 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61160606 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71515013 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71515015 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | esv3343837 | chr8:67137447-67168780 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3327342 | chr8:67137447-67171527 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67165600-67168400 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr8:67165800-67168400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
