Variant report

Variant	rs34328946
Chromosome Location	chr8:67192061-67192062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13264895	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13266379	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16932707	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16932713	0.87[EUR][1000 genomes]
rs34338615	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35200809	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35707268	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35742039	0.87[EUR][1000 genomes]
rs35766715	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58907751	0.87[EUR][1000 genomes]
rs59104426	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60957276	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61160606	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71515011	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71515013	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1017345	chr8:67184975-67209954	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv6235	chr8:67188081-67232737	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67187000-67197200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:67187800-67192600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:67190400-67194400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:67190600-67193400	Weak transcription	Fetal Heart	heart
5	chr8:67191800-67192800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:67192000-67192200	Weak transcription	HSMMtube	muscle
7	chr8:67192000-67195600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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