Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10107018	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10957091	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11775907	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11987803	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11995865	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12544847	0.89[AMR][1000 genomes]
rs12548205	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1401425	0.89[AMR][1000 genomes]
rs2139235	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2326323	0.89[AMR][1000 genomes]
rs3942395	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4316141	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6981902	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6997718	0.89[AMR][1000 genomes]
rs7005684	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7006092	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7006236	0.89[AMR][1000 genomes]
rs7820669	0.89[EUR][1000 genomes]
rs7830834	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60301600-60304000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr8:60301600-60305200	Weak transcription	Dnd41	blood
3	chr8:60302000-60305800	Enhancers	Fetal Intestine Large	intestine
4	chr8:60302200-60304200	Weak transcription	Fetal Lung	lung
5	chr8:60302200-60304600	Enhancers	NHDF-Ad	bronchial
6	chr8:60302200-60305800	Enhancers	Fetal Intestine Small	intestine
7	chr8:60302400-60303400	Enhancers	Small Intestine	intestine
8	chr8:60302400-60303800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr8:60302400-60304000	Enhancers	Duodenum Mucosa	Duodenum
10	chr8:60302600-60303400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr8:60302600-60303600	Enhancers	Fetal Heart	heart
12	chr8:60302600-60303600	Enhancers	Fetal Muscle Leg	muscle
13	chr8:60302600-60303600	Flanking Active TSS	Osteobl	bone
14	chr8:60302600-60303800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:60302600-60303800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:60302600-60304200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:60302600-60304400	Enhancers	Stomach Mucosa	stomach
18	chr8:60302800-60303400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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