Variant report
Variant | rs6471785 |
---|---|
Chromosome Location | chr8:60308883-60308884 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:60307556..60310133-chr8:60318318..60320436,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10107018 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs10957091 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11775907 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11987803 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs11995865 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12544847 | 0.89[AMR][1000 genomes] |
rs12548205 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs13282650 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1401425 | 0.89[AMR][1000 genomes] |
rs2139235 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2326323 | 0.89[AMR][1000 genomes] |
rs3942395 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4316141 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6981902 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs6997718 | 0.89[AMR][1000 genomes] |
rs7005684 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs7006092 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs7006236 | 0.89[AMR][1000 genomes] |
rs7820669 | 0.89[EUR][1000 genomes] |
rs7830834 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029441 | chr8:60099776-60539141 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv539629 | chr8:60099776-60539141 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv831329 | chr8:60162977-60356031 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv831330 | chr8:60270398-60514078 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:60306000-60309800 | Weak transcription | Dnd41 | blood |
2 | chr8:60306600-60309000 | Enhancers | Fetal Heart | heart |