Variant report

Variant	rs6981902
Chromosome Location	chr8:60293615-60293616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10107018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957091	0.82[AMR][1000 genomes]
rs11775907	0.82[AMR][1000 genomes]
rs11987803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995865	0.82[AMR][1000 genomes]
rs12544847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282650	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1401425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1464252	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1474124	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1519070	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2139235	0.82[AMR][1000 genomes]
rs2139236	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2326323	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3942395	0.82[AMR][1000 genomes]
rs6471785	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6997718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7005684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006092	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821098	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7839345	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60292600-60294200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr8:60292600-60294400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:60293000-60294800	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:60293200-60294400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:60293200-60294600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:60293400-60293800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr8:60293400-60294000	Flanking Active TSS	Dnd41	blood
8	chr8:60293400-60294200	Enhancers	Stomach Mucosa	stomach
9	chr8:60293400-60294400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr8:60293400-60294400	Enhancers	Primary hematopoietic stem cells	blood
11	chr8:60293400-60294400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:60293400-60294400	Enhancers	Fetal Thymus	thymus
13	chr8:60293600-60294000	Enhancers	Thymus	Thymus
14	chr8:60293600-60294200	Enhancers	Primary T cells from cord blood	blood
15	chr8:60293600-60294200	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr8:60293600-60294200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:60293600-60294400	Enhancers	Sigmoid Colon	Sigmoid Colon

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