Variant report

Variant	rs13283291
Chromosome Location	chr9:17382575-17382576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10810745	0.84[EUR][1000 genomes]
rs10810746	0.84[EUR][1000 genomes]
rs10810755	0.89[EUR][1000 genomes]
rs10810757	0.81[CEU][hapmap]
rs10810758	0.81[CEU][hapmap]
rs10810759	0.89[EUR][1000 genomes]
rs10810762	0.89[EUR][1000 genomes]
rs10810766	0.81[CEU][hapmap]
rs10810767	0.81[CEU][hapmap]
rs10810772	0.86[EUR][1000 genomes]
rs10810776	0.88[EUR][1000 genomes]
rs10810780	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962993	0.83[EUR][1000 genomes]
rs10962994	0.83[EUR][1000 genomes]
rs10962996	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10962998	0.81[EUR][1000 genomes]
rs10962999	0.81[EUR][1000 genomes]
rs10963000	0.84[EUR][1000 genomes]
rs10963001	0.80[EUR][1000 genomes]
rs10963005	0.81[EUR][1000 genomes]
rs10963015	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10963017	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10963019	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10963022	0.80[EUR][1000 genomes]
rs10963025	0.80[EUR][1000 genomes]
rs10963030	0.88[EUR][1000 genomes]
rs10963031	0.89[EUR][1000 genomes]
rs10963036	0.88[EUR][1000 genomes]
rs10963039	0.89[EUR][1000 genomes]
rs10963040	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10963041	0.89[EUR][1000 genomes]
rs10963045	0.84[CEU][hapmap]
rs10963049	0.81[CEU][hapmap]
rs10963060	0.86[EUR][1000 genomes]
rs10963064	0.88[EUR][1000 genomes]
rs10963065	0.88[EUR][1000 genomes]
rs10963069	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs10963072	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs10963073	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10963077	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10963078	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11515075	0.81[EUR][1000 genomes]
rs11789741	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11789786	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs11791000	0.88[EUR][1000 genomes]
rs11795325	0.83[EUR][1000 genomes]
rs12156444	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12376938	0.83[CEU][hapmap]
rs12376973	0.88[EUR][1000 genomes]
rs12377081	0.80[EUR][1000 genomes]
rs12377334	0.88[EUR][1000 genomes]
rs12378677	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12379538	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs12379655	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12550857	0.81[EUR][1000 genomes]
rs12551355	0.88[EUR][1000 genomes]
rs12553516	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12555618	0.81[CEU][hapmap]
rs13283891	0.89[EUR][1000 genomes]
rs13285577	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13285704	0.90[EUR][1000 genomes]
rs13286365	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13287407	0.80[EUR][1000 genomes]
rs13289670	0.88[EUR][1000 genomes]
rs13289968	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13290659	1.00[CEU][hapmap]
rs13292550	1.00[CEU][hapmap]
rs13301284	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1348277	0.85[ASN][1000 genomes]
rs1348278	0.81[CEU][hapmap]
rs1372703	1.00[CEU][hapmap]
rs1442517	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17755748	0.80[EUR][1000 genomes]
rs17828423	0.80[EUR][1000 genomes]
rs17829280	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1953106	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2027014	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2095156	0.80[EUR][1000 genomes]
rs2151342	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2184063	0.83[EUR][1000 genomes]
rs2383013	0.84[EUR][1000 genomes]
rs2584538	0.95[CEU][hapmap]
rs34256131	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs34502029	0.83[EUR][1000 genomes]
rs35375281	0.88[EUR][1000 genomes]
rs35601090	0.89[EUR][1000 genomes]
rs35884270	0.80[EUR][1000 genomes]
rs35968717	0.84[EUR][1000 genomes]
rs36051199	0.91[EUR][1000 genomes]
rs36063154	0.88[EUR][1000 genomes]
rs36077273	0.80[EUR][1000 genomes]
rs3739490	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs3808791	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3808795	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4317676	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4375098	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs4405013	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4574939	0.82[EUR][1000 genomes]
rs4626705	0.84[EUR][1000 genomes]
rs4961559	0.94[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58474114	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61565870	0.81[EUR][1000 genomes]
rs62558354	0.81[EUR][1000 genomes]
rs62558966	0.89[EUR][1000 genomes]
rs62558996	0.82[EUR][1000 genomes]
rs7019482	0.84[ASN][1000 genomes]
rs7028577	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7041659	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7041744	0.84[EUR][1000 genomes]
rs7042230	0.80[EUR][1000 genomes]
rs7867175	0.81[EUR][1000 genomes]
rs894379	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466271	chr9:17329964-17438391	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613696	chr9:17329964-17438391	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1015524	chr9:17350843-17419424	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv892669	chr9:17378776-17438391	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv892670	chr9:17378776-17507277	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17362000-17394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:17368400-17394600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:17368400-17457800	Weak transcription	Pancreas	Pancrea
4	chr9:17368600-17394800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:17368600-17411200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:17368600-17411400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:17368600-17411400	Weak transcription	Aorta	Aorta
8	chr9:17368800-17411400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:17369000-17395000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:17369400-17411200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:17370600-17386600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:17371400-17394800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr9:17377600-17403000	Weak transcription	Fetal Stomach	stomach
14	chr9:17377800-17383800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:17379400-17404200	Weak transcription	Psoas Muscle	Psoas
16	chr9:17379600-17394800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:17379800-17394600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:17380600-17411000	Weak transcription	Left Ventricle	heart
19	chr9:17381000-17389400	Weak transcription	Fetal Lung	lung
20	chr9:17381000-17411200	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:17381200-17411200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr9:17381400-17397400	Weak transcription	Ovary	ovary
23	chr9:17381400-17422800	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:17381800-17396000	Weak transcription	Liver	Liver
25	chr9:17382000-17394800	Weak transcription	Primary hematopoietic stem cells	blood

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