Variant report

Variant	rs894379
Chromosome Location	chr9:17454593-17454594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10810780	1.00[CEU][hapmap]
rs10962996	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10963015	1.00[CEU][hapmap]
rs10963017	1.00[CEU][hapmap]
rs10963019	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs10963040	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10963045	0.81[CEU][hapmap]
rs10963069	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10963072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10963073	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10963077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10963078	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1160340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11789741	1.00[CEU][hapmap]
rs11789786	0.94[CEU][hapmap]
rs12156444	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12376938	0.81[CEU][hapmap]
rs12377334	0.82[AMR][1000 genomes]
rs12378677	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12379538	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs12379655	1.00[CEU][hapmap]
rs12553516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13283291	1.00[CEU][hapmap]
rs13285577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs13285704	0.81[AMR][1000 genomes]
rs13286365	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13289968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs13290659	1.00[CEU][hapmap]
rs13292550	1.00[CEU][hapmap]
rs13294241	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13298547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13301284	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1372703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1442517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17829280	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1953106	1.00[CEU][hapmap]
rs1967356	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2027014	1.00[CEU][hapmap]
rs2151342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs2584538	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2584540	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34256131	1.00[CEU][hapmap]
rs35375281	0.81[AMR][1000 genomes]
rs35601090	0.82[AMR][1000 genomes]
rs36051199	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3739490	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs3808791	1.00[CEU][hapmap]
rs3808795	1.00[CEU][hapmap]
rs4317676	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4375098	0.81[CEU][hapmap]
rs4405013	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4961559	0.94[CEU][hapmap]
rs62558966	0.82[AMR][1000 genomes]
rs7028577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs7031442	0.83[AFR][1000 genomes]
rs7041659	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892670	chr9:17378776-17507277	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv523411	chr9:17394536-17454799	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17368400-17457800	Weak transcription	Pancreas	Pancrea
2	chr9:17411800-17481000	Weak transcription	Aorta	Aorta
3	chr9:17426400-17466800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:17439400-17466800	Weak transcription	NHDF-Ad	bronchial
5	chr9:17440400-17494600	Weak transcription	Left Ventricle	heart
6	chr9:17441200-17458000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:17441200-17467000	Weak transcription	Adipose Nuclei	Adipose
8	chr9:17441400-17466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:17442000-17491800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:17442200-17467200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:17446000-17467400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:17448000-17457600	Weak transcription	Liver	Liver
13	chr9:17448000-17466800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:17448000-17503400	Weak transcription	Ovary	ovary
15	chr9:17448400-17496400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:17448600-17495800	Weak transcription	Dnd41	blood
17	chr9:17452800-17495600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:17453000-17472200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:17453000-17497000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:17453800-17466800	Weak transcription	Fetal Lung	lung
21	chr9:17453800-17504200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:17454000-17491800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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