Variant report

Variant	rs13286365
Chromosome Location	chr9:17370957-17370958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10810745	0.83[EUR][1000 genomes]
rs10810746	0.83[EUR][1000 genomes]
rs10810755	0.95[EUR][1000 genomes]
rs10810759	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810762	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810772	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810776	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810780	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10962944	0.80[EUR][1000 genomes]
rs10962956	0.81[EUR][1000 genomes]
rs10962958	0.81[EUR][1000 genomes]
rs10962959	0.81[EUR][1000 genomes]
rs10962993	0.81[EUR][1000 genomes]
rs10962994	0.81[EUR][1000 genomes]
rs10962996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10962998	0.86[EUR][1000 genomes]
rs10962999	0.86[EUR][1000 genomes]
rs10963000	0.83[EUR][1000 genomes]
rs10963005	0.80[EUR][1000 genomes]
rs10963015	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes]
rs10963017	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10963018	0.84[EUR][1000 genomes]
rs10963019	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10963022	0.86[EUR][1000 genomes]
rs10963025	0.86[EUR][1000 genomes]
rs10963030	0.95[EUR][1000 genomes]
rs10963031	0.95[EUR][1000 genomes]
rs10963036	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10963039	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10963040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10963041	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10963045	0.81[CEU][hapmap]
rs10963060	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10963064	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10963065	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10963069	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10963072	1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10963073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10963077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963078	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11515075	0.86[EUR][1000 genomes]
rs11523716	0.82[EUR][1000 genomes]
rs1160340	1.00[CHB][hapmap]
rs11789741	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[EUR][1000 genomes]
rs11789786	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11791000	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11795325	0.82[EUR][1000 genomes]
rs12156444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12376505	0.83[EUR][1000 genomes]
rs12376938	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs12376973	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12377081	0.86[EUR][1000 genomes]
rs12377334	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12378677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12379538	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12379655	1.00[CEU][hapmap]
rs12551355	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12553516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12555830	0.82[ASN][1000 genomes]
rs13283291	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13283891	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13285577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13285704	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13286311	0.83[EUR][1000 genomes]
rs13287407	0.86[EUR][1000 genomes]
rs13289670	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13289968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13290659	1.00[CEU][hapmap]
rs13292365	0.81[EUR][1000 genomes]
rs13292380	0.81[EUR][1000 genomes]
rs13292550	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13294241	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs13298547	1.00[CHB][hapmap]
rs13301284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1372703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs1442516	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1442517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755748	0.86[EUR][1000 genomes]
rs17828423	0.86[EUR][1000 genomes]
rs17829280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs1953106	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2027014	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2095156	0.86[EUR][1000 genomes]
rs2151342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2184063	0.82[EUR][1000 genomes]
rs2383013	0.83[EUR][1000 genomes]
rs2584538	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs2584540	0.82[AMR][1000 genomes]
rs34256131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs34502029	0.82[EUR][1000 genomes]
rs34597155	0.80[EUR][1000 genomes]
rs34768018	0.82[EUR][1000 genomes]
rs35375281	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35601090	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35884270	0.86[EUR][1000 genomes]
rs35968717	0.83[EUR][1000 genomes]
rs35998538	0.82[EUR][1000 genomes]
rs36051199	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36063154	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36077273	0.80[EUR][1000 genomes]
rs36088847	0.82[ASN][1000 genomes]
rs3739490	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3808791	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3808795	1.00[CEU][hapmap]
rs4317676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4375098	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4405013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[EUR][1000 genomes]
rs4574939	0.81[EUR][1000 genomes]
rs4626705	0.83[EUR][1000 genomes]
rs4961559	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs58474114	0.88[EUR][1000 genomes]
rs59833414	0.82[EUR][1000 genomes]
rs61565870	0.87[EUR][1000 genomes]
rs62558297	0.80[EUR][1000 genomes]
rs62558300	0.81[EUR][1000 genomes]
rs62558301	0.81[EUR][1000 genomes]
rs62558354	0.86[EUR][1000 genomes]
rs62558966	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7026852	0.82[EUR][1000 genomes]
rs7028577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031442	0.82[ASN][1000 genomes]
rs7041659	0.85[EUR][1000 genomes]
rs7041744	0.83[EUR][1000 genomes]
rs7042230	0.86[EUR][1000 genomes]
rs7867175	0.86[EUR][1000 genomes]
rs894379	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv466271	chr9:17329964-17438391	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv613696	chr9:17329964-17438391	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1015524	chr9:17350843-17419424	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17338800-17371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr9:17355600-17372200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:17362000-17372600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:17362000-17394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:17364600-17376800	Weak transcription	Hela-S3	cervix
6	chr9:17365000-17373600	Weak transcription	HSMM	muscle
7	chr9:17367000-17371400	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:17367200-17371600	Strong transcription	Liver	Liver
9	chr9:17367600-17371200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:17368000-17373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:17368200-17373800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:17368200-17377200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:17368400-17373200	Weak transcription	Fetal Intestine Large	intestine
14	chr9:17368400-17373400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:17368400-17394600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:17368400-17457800	Weak transcription	Pancreas	Pancrea
17	chr9:17368600-17371200	Weak transcription	Right Ventricle	heart
18	chr9:17368600-17371400	Weak transcription	Dnd41	blood
19	chr9:17368600-17373200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:17368600-17378600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:17368600-17394800	Weak transcription	Adipose Nuclei	Adipose
22	chr9:17368600-17411200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:17368600-17411400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:17368600-17411400	Weak transcription	Aorta	Aorta
25	chr9:17368800-17371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:17368800-17380400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:17368800-17411400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:17369000-17380600	Weak transcription	Fetal Lung	lung
29	chr9:17369000-17395000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:17369200-17380000	Weak transcription	Left Ventricle	heart
31	chr9:17369200-17380200	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:17369400-17371000	Weak transcription	Fetal Intestine Small	intestine
33	chr9:17369400-17372000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:17369400-17411200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:17369800-17372200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:17370000-17377200	Weak transcription	Fetal Stomach	stomach
37	chr9:17370000-17380200	Weak transcription	Ovary	ovary
38	chr9:17370600-17386600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:17370800-17371400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links