Variant report

Variant	rs13288260
Chromosome Location	chr9:73108553-73108554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73033648..73035671-chr9:73107577..73110365,3	MCF-7	breast:
2	chr9:73102768..73104960-chr9:73107078..73109058,2	K562	blood:
3	chr9:73104551..73109408-chr9:73114371..73117947,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11999226	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12004613	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13302860	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17054772	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34112146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35069296	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803241	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60480667	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73105200-73110400	Weak transcription	K562	blood
2	chr9:73105800-73109000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73105800-73110600	Enhancers	Left Ventricle	heart
4	chr9:73105800-73110600	Enhancers	Psoas Muscle	Psoas
5	chr9:73106000-73109200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr9:73106000-73110000	Enhancers	Adipose Nuclei	Adipose
7	chr9:73106000-73110800	Enhancers	Right Ventricle	heart
8	chr9:73107000-73108800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr9:73107000-73109200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:73107000-73109800	Enhancers	Lung	lung
11	chr9:73107000-73110800	Enhancers	Right Atrium	heart
12	chr9:73107200-73108600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:73107200-73108600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:73107200-73108600	Enhancers	Gastric	stomach
15	chr9:73107200-73109000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr9:73107200-73109800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr9:73107200-73110000	Enhancers	Primary B cells from peripheral blood	blood
18	chr9:73107200-73110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:73107400-73108600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr9:73107400-73108800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:73107400-73109000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:73107400-73109400	Enhancers	Primary hematopoietic stem cells	blood
23	chr9:73107400-73110000	Enhancers	Fetal Muscle Leg	muscle
24	chr9:73107600-73108800	Weak transcription	Spleen	Spleen
25	chr9:73107600-73110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:73107600-73111400	Weak transcription	Pancreas	Pancrea
27	chr9:73108000-73116600	Weak transcription	Aorta	Aorta
28	chr9:73108200-73108600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr9:73108200-73109200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:73108400-73109400	Enhancers	Stomach Smooth Muscle	stomach
31	chr9:73108400-73109800	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:73108400-73110200	Weak transcription	Brain Substantia Nigra	brain
33	chr9:73108400-73110600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:73108400-73111000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr9:73108400-73112600	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:73108400-73116400	Weak transcription	Rectal Smooth Muscle	rectum

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