Variant report

Variant	rs34112146
Chromosome Location	chr9:73110501-73110502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73028345..73030685-chr9:73109047..73111392,2	K562	blood:
2	chr9:73106041..73107719-chr9:73109475..73112374,2	K562	blood:

Variant related genes	Relation type
ENSG00000119138	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11999226	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12004613	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13288260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13302860	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17054772	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35069296	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803241	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60480667	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73105800-73110600	Enhancers	Left Ventricle	heart
2	chr9:73105800-73110600	Enhancers	Psoas Muscle	Psoas
3	chr9:73106000-73110800	Enhancers	Right Ventricle	heart
4	chr9:73107000-73110800	Enhancers	Right Atrium	heart
5	chr9:73107200-73110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:73107600-73111400	Weak transcription	Pancreas	Pancrea
7	chr9:73108000-73116600	Weak transcription	Aorta	Aorta
8	chr9:73108400-73110600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:73108400-73111000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:73108400-73112600	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:73108400-73116400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:73108800-73111600	Enhancers	Spleen	Spleen
13	chr9:73109200-73111800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:73109400-73110600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:73109400-73110600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:73109800-73112600	Weak transcription	Lung	lung
17	chr9:73110000-73110600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:73110200-73110600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:73110400-73110600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr9:73110400-73110600	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr9:73110400-73110600	Enhancers	Brain Substantia Nigra	brain
22	chr9:73110400-73110600	Enhancers	NHEK	skin
23	chr9:73110400-73110800	Enhancers	K562	blood
24	chr9:73110400-73110800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr9:73110400-73111400	Enhancers	Skeletal Muscle Male	skeletal muscle

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