Variant report

Variant	rs13302860
Chromosome Location	chr9:73098535-73098536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:73030761..73038680-chr9:73091043..73101036,27	MCF-7	breast:
2	chr9:73093971..73096517-chr9:73098061..73099840,2	MCF-7	breast:
3	chr9:73021797..73024342-chr9:73098392..73100733,2	MCF-7	breast:
4	chr9:73037880..73039765-chr9:73096769..73099373,2	K562	blood:
5	chr9:73086029..73087560-chr9:73098200..73100795,2	K562	blood:
6	chr9:73026617..73037908-chr9:73091853..73102499,30	K562	blood:
7	chr9:73098006..73100927-chr9:73106151..73108210,2	MCF-7	breast:
8	chr9:73024140..73032178-chr9:73097921..73102574,15	K562	blood:
9	chr9:73030963..73039331-chr9:73089885..73101071,36	MCF-7	breast:
10	chr9:73025336..73030126-chr9:73090773..73099381,13	MCF-7	breast:
11	chr9:73094287..73096539-chr9:73098438..73101365,3	K562	blood:
12	chr9:73032264..73037880-chr9:73093717..73104954,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119138	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11999226	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12004613	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13288260	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17054772	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34112146	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35069296	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35803241	0.87[EUR][1000 genomes]
rs60480667	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73088600-73107200	Weak transcription	Gastric	stomach
2	chr9:73093600-73100800	Enhancers	Brain Substantia Nigra	brain
3	chr9:73094400-73103600	Weak transcription	Aorta	Aorta
4	chr9:73095000-73100200	Weak transcription	Spleen	Spleen
5	chr9:73095600-73098600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:73095600-73100000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:73095800-73100000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:73095800-73102000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:73096200-73098600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:73096200-73098800	Weak transcription	HMEC	breast
11	chr9:73096200-73099000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:73096200-73099000	Weak transcription	NHEK	skin
13	chr9:73096200-73099200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:73096200-73099200	Weak transcription	NHLF	lung
15	chr9:73096200-73099200	Weak transcription	Osteobl	bone
16	chr9:73096200-73101400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:73096200-73103600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:73096400-73099000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:73096400-73100000	Weak transcription	NHDF-Ad	bronchial
20	chr9:73096400-73101800	Enhancers	Psoas Muscle	Psoas
21	chr9:73096600-73099000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:73096800-73098600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:73096800-73099000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:73096800-73099000	Weak transcription	Adipose Nuclei	Adipose
25	chr9:73096800-73099000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:73096800-73099400	Weak transcription	Liver	Liver
27	chr9:73096800-73100000	Weak transcription	Fetal Lung	lung
28	chr9:73097000-73098600	Weak transcription	Pancreas	Pancrea
29	chr9:73097000-73099000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:73097000-73099000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:73097000-73099200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:73097000-73099200	Weak transcription	Brain Anterior Caudate	brain
33	chr9:73097000-73100200	Weak transcription	HSMMtube	muscle
34	chr9:73097000-73101400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr9:73097000-73103200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:73097400-73098600	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:73097400-73098600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:73097400-73098800	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:73097400-73100200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:73097600-73098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:73097600-73099000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr9:73097600-73099200	Weak transcription	Brain Angular Gyrus	brain
43	chr9:73097600-73100000	Weak transcription	Ovary	ovary
44	chr9:73097600-73100000	Weak transcription	Right Ventricle	heart
45	chr9:73098000-73098600	Enhancers	HSMM	muscle
46	chr9:73098000-73099200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:73098000-73099600	Enhancers	K562	blood
48	chr9:73098200-73100000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr9:73098200-73100200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr9:73098200-73100400	Enhancers	Stomach Mucosa	stomach

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