Variant report

Variant	rs13288820
Chromosome Location	chr10:78550470-78550471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10963707	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963711	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10963713	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13285912	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292958	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13298947	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13299098	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1999489	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4327937	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71506885	0.89[ASN][1000 genomes]
rs71506886	0.90[ASN][1000 genomes]
rs947143	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs947144	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831918	chr10:78463250-78656013	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv508595	chr10:78540540-78602374	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13288820	KIF6	trans	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:78539400-78552000	Weak transcription	Brain Anterior Caudate	brain
2	chr10:78546600-78551800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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