Variant report
| Variant | rs71506885 |
|---|---|
| Chromosome Location | chr10:78550176-78550177 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10811006 | 0.86[ASN][1000 genomes] |
| rs10963695 | 0.90[ASN][1000 genomes] |
| rs10963707 | 0.86[ASN][1000 genomes] |
| rs10963710 | 0.86[ASN][1000 genomes] |
| rs10963711 | 0.86[ASN][1000 genomes] |
| rs10963713 | 0.86[ASN][1000 genomes] |
| rs12380512 | 0.90[ASN][1000 genomes] |
| rs12552620 | 0.90[ASN][1000 genomes] |
| rs13288820 | 0.89[ASN][1000 genomes] |
| rs13291526 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs13292958 | 0.86[ASN][1000 genomes] |
| rs13293062 | 0.83[AMR][1000 genomes] |
| rs13298947 | 0.86[ASN][1000 genomes] |
| rs13299098 | 0.86[ASN][1000 genomes] |
| rs16936951 | 0.86[ASN][1000 genomes] |
| rs1999489 | 0.83[ASN][1000 genomes] |
| rs4327937 | 0.83[ASN][1000 genomes] |
| rs71506883 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs71506884 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs71506886 | 0.86[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs776750 | 0.85[ASN][1000 genomes] |
| rs776751 | 0.85[ASN][1000 genomes] |
| rs776782 | 0.86[ASN][1000 genomes] |
| rs7863100 | 0.90[ASN][1000 genomes] |
| rs947143 | 0.86[ASN][1000 genomes] |
| rs947144 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831918 | chr10:78463250-78656013 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv508595 | chr10:78540540-78602374 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:78539400-78552000 | Weak transcription | Brain Anterior Caudate | brain |
| 2 | chr10:78546600-78551800 | Weak transcription | Brain Cingulate Gyrus | brain |
