Variant report

Variant	rs71506886
Chromosome Location	chr10:78550194-78550195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10963695	0.81[ASN][1000 genomes]
rs12380512	0.81[ASN][1000 genomes]
rs12552620	0.81[ASN][1000 genomes]
rs13288820	0.90[ASN][1000 genomes]
rs71506883	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71506884	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71506885	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7863100	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831918	chr10:78463250-78656013	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv508595	chr10:78540540-78602374	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:78539400-78552000	Weak transcription	Brain Anterior Caudate	brain
2	chr10:78546600-78551800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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