Variant report
| Variant | rs13289229 |
|---|---|
| Chromosome Location | chr9:86224419-86224420 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:86224413..86228341-chr9:86234250..86239512,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000148057 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10114717 | 1.00[ASN][1000 genomes] |
| rs10116424 | 1.00[ASN][1000 genomes] |
| rs10121045 | 1.00[ASN][1000 genomes] |
| rs10121882 | 1.00[ASN][1000 genomes] |
| rs10122131 | 1.00[ASN][1000 genomes] |
| rs10122134 | 1.00[ASN][1000 genomes] |
| rs10123002 | 1.00[ASN][1000 genomes] |
| rs10124333 | 1.00[ASN][1000 genomes] |
| rs10125987 | 1.00[ASN][1000 genomes] |
| rs10481738 | 1.00[ASN][1000 genomes] |
| rs11140184 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11140193 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11140196 | 1.00[ASN][1000 genomes] |
| rs11140201 | 1.00[ASN][1000 genomes] |
| rs11140213 | 1.00[ASN][1000 genomes] |
| rs12335711 | 1.00[ASN][1000 genomes] |
| rs12340935 | 1.00[ASN][1000 genomes] |
| rs12342901 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12343837 | 1.00[ASN][1000 genomes] |
| rs12344615 | 1.00[ASN][1000 genomes] |
| rs12345514 | 1.00[ASN][1000 genomes] |
| rs12351677 | 1.00[ASN][1000 genomes] |
| rs13284999 | 1.00[ASN][1000 genomes] |
| rs13291631 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13292088 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13294533 | 1.00[ASN][1000 genomes] |
| rs13301956 | 1.00[ASN][1000 genomes] |
| rs2780983 | 1.00[ASN][1000 genomes] |
| rs2780987 | 1.00[ASN][1000 genomes] |
| rs2780988 | 1.00[ASN][1000 genomes] |
| rs2780989 | 1.00[ASN][1000 genomes] |
| rs2811898 | 1.00[ASN][1000 genomes] |
| rs28555298 | 1.00[ASN][1000 genomes] |
| rs3447 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34778713 | 1.00[ASN][1000 genomes] |
| rs34891935 | 1.00[ASN][1000 genomes] |
| rs35378833 | 1.00[ASN][1000 genomes] |
| rs35535452 | 1.00[ASN][1000 genomes] |
| rs4364707 | 1.00[ASN][1000 genomes] |
| rs7045761 | 1.00[ASN][1000 genomes] |
| rs9314722 | 1.00[ASN][1000 genomes] |
| rs944947 | 1.00[ASN][1000 genomes] |
| rs9987871 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893512 | chr9:86022215-86323309 | Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:86216200-86237400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr9:86223400-86224800 | Enhancers | HepG2 | liver |
| 3 | chr9:86224200-86225800 | Weak transcription | Liver | Liver |
