Variant report

Variant	rs2780987
Chromosome Location	chr9:86214615-86214616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86213623..86215956-chr9:86235876..86238366,2	K562	blood:

Variant related genes	Relation type
ENSG00000148057	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10114717	1.00[ASN][1000 genomes]
rs10116424	1.00[ASN][1000 genomes]
rs10121045	1.00[ASN][1000 genomes]
rs10121882	1.00[ASN][1000 genomes]
rs10122131	1.00[ASN][1000 genomes]
rs10122134	1.00[ASN][1000 genomes]
rs10123002	1.00[ASN][1000 genomes]
rs10124333	1.00[ASN][1000 genomes]
rs10125987	1.00[ASN][1000 genomes]
rs10481738	1.00[ASN][1000 genomes]
rs11140184	1.00[ASN][1000 genomes]
rs11140193	1.00[ASN][1000 genomes]
rs11140196	1.00[ASN][1000 genomes]
rs11140201	1.00[ASN][1000 genomes]
rs11140213	1.00[ASN][1000 genomes]
rs12335711	1.00[ASN][1000 genomes]
rs12340935	1.00[ASN][1000 genomes]
rs12342901	1.00[ASN][1000 genomes]
rs12343837	1.00[ASN][1000 genomes]
rs12344615	1.00[ASN][1000 genomes]
rs12345514	1.00[ASN][1000 genomes]
rs12351677	1.00[ASN][1000 genomes]
rs13284999	1.00[ASN][1000 genomes]
rs13289229	1.00[ASN][1000 genomes]
rs13291631	1.00[ASN][1000 genomes]
rs13292088	1.00[ASN][1000 genomes]
rs13294533	1.00[ASN][1000 genomes]
rs13301956	1.00[ASN][1000 genomes]
rs2780983	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780985	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs2780988	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780989	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811897	0.88[GIH][hapmap]
rs2811898	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28555298	1.00[ASN][1000 genomes]
rs3447	1.00[ASN][1000 genomes]
rs34778713	1.00[ASN][1000 genomes]
rs34891935	1.00[ASN][1000 genomes]
rs35378833	1.00[ASN][1000 genomes]
rs35535452	1.00[ASN][1000 genomes]
rs4364707	1.00[ASN][1000 genomes]
rs7045761	1.00[ASN][1000 genomes]
rs9314722	1.00[ASN][1000 genomes]
rs944947	1.00[ASN][1000 genomes]
rs9987871	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762820	chr9:86214615-86220040	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86188000-86215200	Weak transcription	Primary T cells from cord blood	blood
2	chr9:86198800-86217800	Weak transcription	Aorta	Aorta
3	chr9:86213000-86214800	Enhancers	HepG2	liver
4	chr9:86214600-86216200	Weak transcription	Fetal Intestine Large	intestine

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