Variant report

Variant	rs2811898
Chromosome Location	chr9:86216686-86216687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86215991..86217678-chr9:86226760..86228301,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10114717	1.00[ASN][1000 genomes]
rs10116424	1.00[ASN][1000 genomes]
rs10121045	1.00[ASN][1000 genomes]
rs10121882	1.00[ASN][1000 genomes]
rs10122131	1.00[ASN][1000 genomes]
rs10122134	1.00[ASN][1000 genomes]
rs10123002	1.00[ASN][1000 genomes]
rs10124333	1.00[ASN][1000 genomes]
rs10125987	1.00[ASN][1000 genomes]
rs10481738	1.00[ASN][1000 genomes]
rs11140184	1.00[ASN][1000 genomes]
rs11140193	1.00[ASN][1000 genomes]
rs11140196	1.00[ASN][1000 genomes]
rs11140201	1.00[ASN][1000 genomes]
rs11140213	1.00[ASN][1000 genomes]
rs12335711	1.00[ASN][1000 genomes]
rs12340935	1.00[ASN][1000 genomes]
rs12342901	1.00[ASN][1000 genomes]
rs12343837	1.00[ASN][1000 genomes]
rs12344615	1.00[ASN][1000 genomes]
rs12345514	1.00[ASN][1000 genomes]
rs12351677	1.00[ASN][1000 genomes]
rs13284999	1.00[ASN][1000 genomes]
rs13289229	1.00[ASN][1000 genomes]
rs13291631	1.00[ASN][1000 genomes]
rs13292088	1.00[ASN][1000 genomes]
rs13294533	1.00[ASN][1000 genomes]
rs13301956	1.00[ASN][1000 genomes]
rs2780983	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780985	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs2780987	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[LWK][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780988	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780989	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811897	0.81[GIH][hapmap]
rs28555298	1.00[ASN][1000 genomes]
rs3447	1.00[ASN][1000 genomes]
rs34778713	1.00[ASN][1000 genomes]
rs34891935	1.00[ASN][1000 genomes]
rs35378833	1.00[ASN][1000 genomes]
rs35535452	1.00[ASN][1000 genomes]
rs4364707	1.00[ASN][1000 genomes]
rs7045761	1.00[ASN][1000 genomes]
rs9314722	1.00[ASN][1000 genomes]
rs944947	1.00[ASN][1000 genomes]
rs9987871	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2762820	chr9:86214615-86220040	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2811898	UBQLN1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86198800-86217800	Weak transcription	Aorta	Aorta
2	chr9:86214800-86223400	Weak transcription	HepG2	liver
3	chr9:86216200-86237400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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