Variant report

Variant	rs2780985
Chromosome Location	chr9:86216343-86216344
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11140183	1.00[CHB][hapmap]
rs11140191	1.00[CHB][hapmap]
rs11140192	1.00[CHB][hapmap]
rs11140199	1.00[CHB][hapmap]
rs11140203	1.00[CHB][hapmap]
rs11140215	1.00[CHB][hapmap]
rs12236743	1.00[CHB][hapmap]
rs12238575	1.00[CHB][hapmap]
rs17086503	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2282221	1.00[CHB][hapmap]
rs2282222	1.00[CHB][hapmap]
rs2780987	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs2780988	0.90[CEU][hapmap];0.82[AMR][1000 genomes]
rs2780989	0.82[AMR][1000 genomes]
rs2811898	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2762820	chr9:86214615-86220040	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86198800-86217800	Weak transcription	Aorta	Aorta
2	chr9:86214800-86223400	Weak transcription	HepG2	liver
3	chr9:86216200-86216400	Enhancers	Fetal Intestine Large	intestine
4	chr9:86216200-86237400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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