Variant report

Variant	rs13289853
Chromosome Location	chr9:13278256-13278257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13275549..13278427-chr9:13279998..13281670,2	K562	blood:
2	chr9:13278089..13282078-chr9:14313109..14316114,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3376897	chr9:13277977-13280925	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13277600-13278400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:13277600-13279800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:13277800-13278400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr9:13277800-13278400	Flanking Active TSS	HUVEC	blood vessel
5	chr9:13277800-13278800	Flanking Active TSS	NH-A	brain
6	chr9:13277800-13280000	Active TSS	Brain Anterior Caudate	brain
7	chr9:13277800-13280000	Active TSS	Colon Smooth Muscle	Colon
8	chr9:13277800-13280000	Active TSS	Fetal Brain Female	brain
9	chr9:13277800-13280000	Active TSS	A549	lung
10	chr9:13277800-13280000	Active TSS	Osteobl	bone
11	chr9:13277800-13280200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr9:13277800-13280200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr9:13277800-13280200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:13277800-13280200	Active TSS	Aorta	Aorta
15	chr9:13277800-13280200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:13277800-13280200	Active TSS	NHLF	lung
17	chr9:13277800-13280400	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr9:13277800-13280400	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:13278000-13278400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr9:13278000-13278400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:13278000-13278400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:13278000-13278400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr9:13278000-13278400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:13278000-13278400	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr9:13278000-13278400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
26	chr9:13278000-13278400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr9:13278000-13278400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr9:13278000-13278600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:13278000-13278600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:13278000-13278600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:13278000-13278600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr9:13278000-13278600	Flanking Active TSS	Fetal Brain Male	brain
33	chr9:13278000-13278600	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr9:13278000-13278800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr9:13278000-13279000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:13278000-13279800	Active TSS	Primary hematopoietic stem cells	blood
37	chr9:13278000-13280000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:13278000-13280000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:13278000-13280000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:13278000-13280000	Active TSS	Brain Angular Gyrus	brain
41	chr9:13278000-13280000	Active TSS	Brain Germinal Matrix	brain
42	chr9:13278000-13280000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:13278000-13280000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
44	chr9:13278000-13280000	Active TSS	Fetal Kidney	kidney
45	chr9:13278000-13280000	Active TSS	HSMM	muscle
46	chr9:13278000-13280000	Active TSS	K562	blood
47	chr9:13278000-13280000	Active TSS	NHDF-Ad	bronchial
48	chr9:13278000-13280200	Active TSS	H1 Cell Line	embryonic stem cell
49	chr9:13278000-13280200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:13278000-13280200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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