Variant report
| Variant | rs1329072 |
|---|---|
| Chromosome Location | chr9:104020388-104020389 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000148123 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10115417 | 1.00[ASN][1000 genomes] |
| rs10122687 | 1.00[ASN][1000 genomes] |
| rs10123064 | 0.91[AMR][1000 genomes] |
| rs12000705 | 1.00[ASN][1000 genomes] |
| rs12000720 | 1.00[ASN][1000 genomes] |
| rs12343249 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12347679 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17763891 | 0.91[AMR][1000 genomes] |
| rs17763929 | 0.91[AMR][1000 genomes] |
| rs28490420 | 0.82[AMR][1000 genomes] |
| rs35772088 | 0.91[AMR][1000 genomes] |
| rs62576890 | 0.91[AMR][1000 genomes] |
| rs62576892 | 0.91[AMR][1000 genomes] |
| rs7037136 | 1.00[ASN][1000 genomes] |
| rs72741479 | 0.91[AMR][1000 genomes] |
| rs72741482 | 0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831671 | chr9:103858107-104020816 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
