Variant report

Variant	rs10123064
Chromosome Location	chr9:104053923-104053924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10115417	0.88[EUR][1000 genomes]
rs10989500	1.00[AFR][1000 genomes]
rs10989508	1.00[AFR][1000 genomes]
rs10989509	1.00[AFR][1000 genomes]
rs10989510	1.00[AFR][1000 genomes]
rs10989511	1.00[AFR][1000 genomes]
rs10989514	1.00[AFR][1000 genomes]
rs10989517	1.00[AFR][1000 genomes]
rs12337537	1.00[AFR][1000 genomes]
rs12342675	0.89[EUR][1000 genomes]
rs12343249	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12347679	0.83[AMR][1000 genomes]
rs13283255	1.00[AFR][1000 genomes]
rs13289803	1.00[AFR][1000 genomes]
rs1329072	0.91[AMR][1000 genomes]
rs13291205	1.00[AFR][1000 genomes]
rs13292387	1.00[AFR][1000 genomes]
rs13293022	1.00[AFR][1000 genomes]
rs13297805	1.00[AFR][1000 genomes]
rs17186534	1.00[AFR][1000 genomes]
rs17186933	1.00[AFR][1000 genomes]
rs17763891	0.80[AMR][1000 genomes]
rs17763929	0.80[AMR][1000 genomes]
rs17772514	1.00[AFR][1000 genomes]
rs17772612	1.00[AFR][1000 genomes]
rs17772672	1.00[AFR][1000 genomes]
rs17772869	1.00[AFR][1000 genomes]
rs17773076	1.00[AFR][1000 genomes]
rs1929492	1.00[AFR][1000 genomes]
rs28490420	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34664558	1.00[AFR][1000 genomes]
rs35772088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41310087	1.00[AFR][1000 genomes]
rs45455902	1.00[AFR][1000 genomes]
rs62576890	0.80[AMR][1000 genomes]
rs62576892	0.80[AMR][1000 genomes]
rs7037136	0.96[EUR][1000 genomes]
rs71491792	1.00[AFR][1000 genomes]
rs72741479	0.80[AMR][1000 genomes]
rs72741482	0.80[AMR][1000 genomes]
rs7862376	0.96[EUR][1000 genomes]
rs7865392	0.96[EUR][1000 genomes]
rs7875706	0.96[EUR][1000 genomes]
rs954738	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104038200-104054000	Weak transcription	Fetal Brain Male	brain
2	chr9:104046000-104056400	Weak transcription	Brain Anterior Caudate	brain
3	chr9:104046000-104061800	Weak transcription	Brain Substantia Nigra	brain
4	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:104051400-104067800	Weak transcription	HepG2	liver
6	chr9:104051600-104054600	Weak transcription	Fetal Brain Female	brain
7	chr9:104052600-104054800	Weak transcription	Brain Hippocampus Middle	brain

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