Variant report

Variant	rs1929492
Chromosome Location	chr9:104166322-104166323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104159627..104161244-chr9:104162690..104167076,3	K562	blood:
2	chr9:104165233..104170505-chr9:104171045..104175682,8	MCF-7	breast:
3	chr9:104123707..104126200-chr9:104166041..104167917,2	K562	blood:
4	chr9:104165438..104167671-chr9:104247717..104249676,2	K562	blood:
5	chr9:104159249..104163273-chr9:104164661..104168431,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136870	Chromatin interaction
ENSG00000136897	Chromatin interaction
ENSG00000165152	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10123064	1.00[AFR][1000 genomes]
rs1047968	1.00[MKK][hapmap]
rs10989500	0.91[GIH][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs10989508	1.00[AFR][1000 genomes]
rs10989509	1.00[AFR][1000 genomes]
rs10989510	1.00[AFR][1000 genomes]
rs10989511	1.00[AFR][1000 genomes]
rs10989514	1.00[AFR][1000 genomes]
rs10989517	1.00[AFR][1000 genomes]
rs12337537	1.00[AFR][1000 genomes]
rs13283255	1.00[AFR][1000 genomes]
rs13289803	1.00[AFR][1000 genomes]
rs13291205	1.00[AFR][1000 genomes]
rs13292387	1.00[AFR][1000 genomes]
rs13293022	1.00[AFR][1000 genomes]
rs13297805	1.00[AFR][1000 genomes]
rs1534828	1.00[MKK][hapmap]
rs17186534	1.00[AFR][1000 genomes]
rs17186933	1.00[AFR][1000 genomes]
rs17772514	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17772612	1.00[AFR][1000 genomes]
rs17772672	1.00[AFR][1000 genomes]
rs17772845	1.00[MKK][hapmap]
rs17772869	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs17773076	1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs34664558	1.00[AFR][1000 genomes]
rs35772088	1.00[AFR][1000 genomes]
rs41310087	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45455902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491792	1.00[AFR][1000 genomes]
rs954738	1.00[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1929492	ALDOB	cis	lymphoblastoid	seeQTL
rs1929492	ZNF189	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104162000-104169600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:104162400-104167400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:104162600-104170400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:104162600-104170400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:104162600-104171600	Strong transcription	Placenta	Placenta
6	chr9:104162600-104172000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:104162800-104167000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:104162800-104167000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr9:104162800-104167400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:104162800-104168000	Weak transcription	Esophagus	oesophagus
11	chr9:104162800-104169000	Strong transcription	HSMMtube	muscle
12	chr9:104162800-104169200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:104162800-104169400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:104162800-104169600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:104162800-104170000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr9:104162800-104170000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:104162800-104172200	ZNF genes & repeats	A549	lung
18	chr9:104162800-104173800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:104163000-104167000	Strong transcription	Osteobl	bone
20	chr9:104163000-104167200	Strong transcription	NHLF	lung
21	chr9:104163000-104167400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:104163000-104168000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr9:104163000-104169600	Strong transcription	Fetal Thymus	thymus
24	chr9:104163000-104169800	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:104163000-104173000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr9:104163200-104167000	Strong transcription	Primary T cells from cord blood	blood
27	chr9:104163200-104167200	Strong transcription	HMEC	breast
28	chr9:104163200-104167200	Strong transcription	NH-A	brain
29	chr9:104163200-104167600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:104163200-104168600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr9:104163200-104169200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:104163200-104170200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:104163200-104172600	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr9:104163200-104174000	ZNF genes & repeats	Fetal Lung	lung
35	chr9:104163400-104168600	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:104163400-104172200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr9:104163400-104174000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:104163600-104167400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr9:104163600-104167600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:104163600-104168000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:104163600-104170600	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr9:104163600-104173600	ZNF genes & repeats	Ovary	ovary
43	chr9:104163800-104166400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:104163800-104166800	Strong transcription	Brain Cingulate Gyrus	brain
45	chr9:104164000-104166600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:104164000-104167400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:104164000-104167400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:104164000-104170000	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr9:104164000-104173600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:104164200-104166600	ZNF genes & repeats	Left Ventricle	heart

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