Variant report

Variant	rs45455902
Chromosome Location	chr9:104171523-104171524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104165233..104170505-chr9:104171045..104175682,8	MCF-7	breast:
2	chr9:104171442..104174138-chr9:104174646..104177184,3	MCF-7	breast:
3	chr9:104171015..104173390-chr9:104201738..104204667,2	K562	blood:
4	chr9:104171470..104172972-chr9:104174502..104177439,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10123064	1.00[AFR][1000 genomes]
rs10989500	1.00[AFR][1000 genomes]
rs10989508	1.00[AFR][1000 genomes]
rs10989509	1.00[AFR][1000 genomes]
rs10989510	1.00[AFR][1000 genomes]
rs10989511	1.00[AFR][1000 genomes]
rs10989514	1.00[AFR][1000 genomes]
rs10989517	1.00[AFR][1000 genomes]
rs12337537	1.00[AFR][1000 genomes]
rs13283255	1.00[AFR][1000 genomes]
rs13289803	1.00[AFR][1000 genomes]
rs13291205	1.00[AFR][1000 genomes]
rs13292387	1.00[AFR][1000 genomes]
rs13293022	1.00[AFR][1000 genomes]
rs13297805	1.00[AFR][1000 genomes]
rs17186534	1.00[AFR][1000 genomes]
rs17186933	1.00[AFR][1000 genomes]
rs17772514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17772612	1.00[AFR][1000 genomes]
rs17772672	1.00[AFR][1000 genomes]
rs17772869	1.00[AFR][1000 genomes]
rs17773076	1.00[AFR][1000 genomes]
rs1929492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34664558	1.00[AFR][1000 genomes]
rs35772088	1.00[AFR][1000 genomes]
rs41310087	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491792	1.00[AFR][1000 genomes]
rs954738	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs45455902	ZNF189	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104162600-104171600	Strong transcription	Placenta	Placenta
2	chr9:104162600-104172000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:104162800-104172200	ZNF genes & repeats	A549	lung
4	chr9:104162800-104173800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:104163000-104173000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr9:104163200-104172600	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr9:104163200-104174000	ZNF genes & repeats	Fetal Lung	lung
8	chr9:104163400-104172200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr9:104163400-104174000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:104163600-104173600	ZNF genes & repeats	Ovary	ovary
11	chr9:104164000-104173600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:104164200-104172200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:104164400-104171800	ZNF genes & repeats	Dnd41	blood
14	chr9:104164400-104172000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:104164400-104173400	ZNF genes & repeats	Colon Smooth Muscle	Colon
16	chr9:104164600-104173600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:104164600-104173800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:104164800-104173400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr9:104164800-104174200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:104164800-104174200	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr9:104164800-104175400	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr9:104165000-104173800	ZNF genes & repeats	Liver	Liver
23	chr9:104165200-104172000	ZNF genes & repeats	Fetal Intestine Large	intestine
24	chr9:104165200-104172000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
25	chr9:104165200-104172200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
26	chr9:104165200-104172200	ZNF genes & repeats	GM12878-XiMat	blood
27	chr9:104165200-104172200	ZNF genes & repeats	K562	blood
28	chr9:104165200-104172600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
29	chr9:104165200-104172800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:104165400-104172000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
31	chr9:104165400-104172000	ZNF genes & repeats	Fetal Kidney	kidney
32	chr9:104165400-104172200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr9:104165400-104172400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:104165400-104172400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
35	chr9:104165400-104172600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
36	chr9:104165400-104172600	ZNF genes & repeats	Fetal Brain Female	brain
37	chr9:104165400-104172600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr9:104165400-104172600	ZNF genes & repeats	NHEK	skin
39	chr9:104165400-104173200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr9:104165400-104173600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
41	chr9:104165400-104173600	ZNF genes & repeats	HSMM	muscle
42	chr9:104165400-104176200	ZNF genes & repeats	Adipose Nuclei	Adipose
43	chr9:104165600-104172200	ZNF genes & repeats	Brain Substantia Nigra	brain
44	chr9:104165600-104178200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
45	chr9:104166000-104172600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
46	chr9:104166200-104172000	ZNF genes & repeats	Brain Anterior Caudate	brain
47	chr9:104166200-104172800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr9:104166200-104173000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr9:104166400-104173000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:104167000-104172000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links