Variant report

Variant	rs72741479
Chromosome Location	chr9:103983676-103983677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10123064	0.80[AMR][1000 genomes]
rs12347679	0.83[AMR][1000 genomes]
rs1329072	0.91[AMR][1000 genomes]
rs17763891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17763929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35772088	0.80[AMR][1000 genomes]
rs62576890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62576892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741482	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103980600-103983800	Enhancers	Stomach Mucosa	stomach
2	chr9:103981800-103992000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:103982600-103983800	Weak transcription	Small Intestine	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links