Variant report

Variant	rs13295541
Chromosome Location	chr9:17940265-17940266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs13283504	0.92[ASN][1000 genomes]
rs13284300	0.83[ASN][1000 genomes]
rs13287592	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13287606	0.88[ASN][1000 genomes]
rs13288789	0.88[ASN][1000 genomes]
rs13291916	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13293273	0.88[ASN][1000 genomes]
rs13294429	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13294741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329911	0.85[ASN][1000 genomes]
rs1329912	0.85[ASN][1000 genomes]
rs1329913	0.85[ASN][1000 genomes]
rs1329914	0.85[ASN][1000 genomes]
rs1329915	0.85[ASN][1000 genomes]
rs13301593	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1617919	0.83[ASN][1000 genomes]
rs1755285	0.85[ASN][1000 genomes]
rs1755290	0.80[ASN][1000 genomes]
rs1755291	0.84[ASN][1000 genomes]
rs1778168	1.00[ASN][1000 genomes]
rs1778170	0.85[ASN][1000 genomes]
rs1778184	0.85[ASN][1000 genomes]
rs1778185	0.81[ASN][1000 genomes]
rs2772684	0.85[ASN][1000 genomes]
rs2772685	0.85[ASN][1000 genomes]
rs2772691	0.96[ASN][1000 genomes]
rs2772693	0.96[ASN][1000 genomes]
rs2811806	0.85[ASN][1000 genomes]
rs2811814	0.92[ASN][1000 genomes]
rs2811818	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2811819	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2811825	0.92[ASN][1000 genomes]
rs2811826	0.96[ASN][1000 genomes]
rs2811827	0.96[ASN][1000 genomes]
rs2840771	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2840772	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2840773	0.85[ASN][1000 genomes]
rs2840775	0.85[ASN][1000 genomes]
rs2840776	0.85[ASN][1000 genomes]
rs2840777	0.81[ASN][1000 genomes]
rs2840778	0.96[ASN][1000 genomes]
rs2840780	0.96[ASN][1000 genomes]
rs2840781	0.96[ASN][1000 genomes]
rs2840783	0.92[ASN][1000 genomes]
rs2840784	0.96[ASN][1000 genomes]
rs2840785	0.96[ASN][1000 genomes]
rs2840786	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2840788	0.92[ASN][1000 genomes]
rs34423194	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34560846	0.96[ASN][1000 genomes]
rs34572868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34573054	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35183350	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35201481	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35514428	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35991112	0.96[ASN][1000 genomes]
rs4477123	0.86[EUR][1000 genomes]
rs71506850	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71506851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71506856	0.92[ASN][1000 genomes]
rs7847522	0.83[ASN][1000 genomes]
rs7851449	0.96[ASN][1000 genomes]
rs7863138	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7867106	0.96[ASN][1000 genomes]
rs884098	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1795741	chr9:17880109-17951331	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv1797946	chr9:17880109-17951331	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv1818676	chr9:17880109-17951331	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv1829631	chr9:17880109-17951331	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv1830694	chr9:17880109-17951331	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv1834674	chr9:17880109-17951331	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv1836647	chr9:17880109-17951331	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv1845722	chr9:17880109-17951331	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv1849548	chr9:17880109-17951331	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv892676	chr9:17911466-17987408	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv892677	chr9:17918806-18002205	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv1020855	chr9:17929044-17975791	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17936800-17943800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:17940200-17962200	Weak transcription	Aorta	Aorta

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