Variant report
Variant | rs35183350 |
---|---|
Chromosome Location | chr9:17931512-17931513 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10810875 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13283504 | 0.88[ASN][1000 genomes] |
rs13284300 | 0.96[ASN][1000 genomes] |
rs13287592 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13287606 | 0.84[ASN][1000 genomes] |
rs13288789 | 0.84[ASN][1000 genomes] |
rs13291916 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13293273 | 0.84[ASN][1000 genomes] |
rs13294429 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13294741 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs13295541 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1329911 | 0.81[ASN][1000 genomes] |
rs1329912 | 0.81[ASN][1000 genomes] |
rs1329913 | 0.81[ASN][1000 genomes] |
rs1329914 | 0.81[ASN][1000 genomes] |
rs1329915 | 0.81[ASN][1000 genomes] |
rs13301593 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1755285 | 0.81[ASN][1000 genomes] |
rs1755290 | 0.84[ASN][1000 genomes] |
rs1755291 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1778168 | 0.87[ASN][1000 genomes] |
rs1778170 | 0.81[ASN][1000 genomes] |
rs1778184 | 0.81[ASN][1000 genomes] |
rs2772684 | 0.81[ASN][1000 genomes] |
rs2772685 | 0.81[ASN][1000 genomes] |
rs2772691 | 0.83[ASN][1000 genomes] |
rs2772693 | 0.83[ASN][1000 genomes] |
rs2811806 | 0.81[ASN][1000 genomes] |
rs2811814 | 0.88[ASN][1000 genomes] |
rs2811818 | 0.91[ASN][1000 genomes] |
rs2811819 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2811826 | 0.83[ASN][1000 genomes] |
rs2811827 | 0.83[ASN][1000 genomes] |
rs2840771 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2840772 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2840773 | 0.81[ASN][1000 genomes] |
rs2840775 | 0.81[ASN][1000 genomes] |
rs2840776 | 0.81[ASN][1000 genomes] |
rs2840778 | 0.83[ASN][1000 genomes] |
rs2840780 | 0.83[ASN][1000 genomes] |
rs2840781 | 0.83[ASN][1000 genomes] |
rs2840784 | 0.83[ASN][1000 genomes] |
rs2840785 | 0.83[ASN][1000 genomes] |
rs2840786 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2840788 | 0.88[ASN][1000 genomes] |
rs34423194 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs34560846 | 0.83[ASN][1000 genomes] |
rs34572868 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs34573054 | 0.84[ASN][1000 genomes] |
rs35201481 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs35514428 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35991112 | 0.83[ASN][1000 genomes] |
rs4477123 | 0.91[ASN][1000 genomes] |
rs71504890 | 0.91[EUR][1000 genomes] |
rs71506850 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs71506851 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs71506856 | 0.88[ASN][1000 genomes] |
rs7847522 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7851449 | 0.83[ASN][1000 genomes] |
rs7863138 | 0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7863226 | 0.82[EUR][1000 genomes] |
rs7867066 | 0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7867106 | 0.83[ASN][1000 genomes] |
rs884098 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv613706 | chr9:17718918-18090934 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv613707 | chr9:17720175-18070475 | Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv613708 | chr9:17720175-18072085 | Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | esv1795741 | chr9:17880109-17951331 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
5 | esv1797946 | chr9:17880109-17951331 | Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
6 | esv1818676 | chr9:17880109-17951331 | Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
7 | esv1829631 | chr9:17880109-17951331 | Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
8 | esv1830694 | chr9:17880109-17951331 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
9 | esv1834674 | chr9:17880109-17951331 | Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
10 | esv1836647 | chr9:17880109-17951331 | Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
11 | esv1845722 | chr9:17880109-17951331 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
12 | esv1849548 | chr9:17880109-17951331 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
13 | esv1835770 | chr9:17895450-17932804 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
14 | esv1838406 | chr9:17895450-17932804 | Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
15 | nsv892676 | chr9:17911466-17987408 | Enhancers Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
16 | nsv892677 | chr9:17918806-18002205 | Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
17 | nsv1020855 | chr9:17929044-17975791 | Weak transcription Enhancers ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
18 | nsv1021862 | chr9:17931213-18052101 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:17923000-17940000 | Weak transcription | Aorta | Aorta |
2 | chr9:17929400-17932200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
3 | chr9:17929400-17932400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
4 | chr9:17930400-17931600 | Weak transcription | H1 Cell Line | embryonic stem cell |
5 | chr9:17930600-17931600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
6 | chr9:17930800-17932000 | Enhancers | H9 Cell Line | embryonic stem cell |
7 | chr9:17931000-17932400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
8 | chr9:17931000-17932400 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
9 | chr9:17931200-17933200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |