Variant report

Variant	rs2840776
Chromosome Location	chr9:17968302-17968303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13283504	0.92[ASN][1000 genomes]
rs13287606	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13288789	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13293273	0.89[ASN][1000 genomes]
rs13294741	0.85[ASN][1000 genomes]
rs13295541	0.85[ASN][1000 genomes]
rs1329911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329913	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329914	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329915	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1617919	0.85[ASN][1000 genomes]
rs1755285	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755290	0.81[ASN][1000 genomes]
rs1778168	0.85[ASN][1000 genomes]
rs1778170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778184	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778185	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2772684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2772685	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2772691	0.88[ASN][1000 genomes]
rs2772693	0.88[ASN][1000 genomes]
rs2811806	1.00[ASN][1000 genomes]
rs2811814	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2811825	0.85[ASN][1000 genomes]
rs2811826	0.88[ASN][1000 genomes]
rs2811827	0.88[ASN][1000 genomes]
rs2840773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840777	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2840778	0.88[ASN][1000 genomes]
rs2840780	0.88[ASN][1000 genomes]
rs2840781	0.88[ASN][1000 genomes]
rs2840783	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2840784	0.88[ASN][1000 genomes]
rs2840785	0.88[ASN][1000 genomes]
rs2840788	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34560846	0.88[ASN][1000 genomes]
rs34573054	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35183350	0.81[ASN][1000 genomes]
rs35514428	0.85[ASN][1000 genomes]
rs35991112	0.88[ASN][1000 genomes]
rs71506856	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7851449	0.88[ASN][1000 genomes]
rs7867106	0.88[ASN][1000 genomes]
rs884098	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892676	chr9:17911466-17987408	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv892677	chr9:17918806-18002205	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1020855	chr9:17929044-17975791	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv613722	chr9:17951331-17970620	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv518330	chr9:17965723-18017562	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17963000-17970600	Weak transcription	Aorta	Aorta
2	chr9:17968000-17970800	Enhancers	Rectal Mucosa Donor 31	rectum

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