Variant report

Variant	rs1329655
Chromosome Location	chr10:93353083-93353084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93347896..93349521-chr10:93352949..93355020,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11813425	0.81[YRI][hapmap]
rs1341993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4329592	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60185155	0.84[ASN][1000 genomes]
rs7076799	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7894250	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7897040	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7899167	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1329655	TNKS2	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
2	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:93347400-93353400	Enhancers	Ovary	ovary
4	chr10:93347400-93353800	Enhancers	Pancreas	Pancrea
5	chr10:93347400-93354400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:93347600-93353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:93347600-93353400	Enhancers	Right Atrium	heart
8	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
9	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
10	chr10:93349000-93353400	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:93349000-93356200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:93349200-93354800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:93349400-93356200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:93349600-93353200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:93351000-93356400	Weak transcription	HMEC	breast
16	chr10:93351200-93356400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:93351400-93353200	Weak transcription	Aorta	Aorta
18	chr10:93351400-93354200	Weak transcription	Esophagus	oesophagus
19	chr10:93351400-93354400	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:93351400-93357200	Weak transcription	Lung	lung
21	chr10:93351600-93353400	Weak transcription	Psoas Muscle	Psoas
22	chr10:93351600-93353800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:93351600-93354200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:93351600-93354600	Enhancers	K562	blood
25	chr10:93351600-93355600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:93351600-93356000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:93351600-93356200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:93351600-93356400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:93351600-93356400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:93351600-93356600	Weak transcription	Adipose Nuclei	Adipose
31	chr10:93351600-93356600	Weak transcription	Gastric	stomach
32	chr10:93351600-93356600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:93351800-93353200	Enhancers	Duodenum Mucosa	Duodenum
34	chr10:93351800-93353200	Enhancers	HSMMtube	muscle
35	chr10:93351800-93353400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
36	chr10:93351800-93353600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:93351800-93354600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:93351800-93355000	Enhancers	Colon Smooth Muscle	Colon
39	chr10:93351800-93356600	Enhancers	A549	lung
40	chr10:93351800-93356800	Weak transcription	Fetal Brain Female	brain
41	chr10:93351800-93357200	Enhancers	Hela-S3	cervix
42	chr10:93351800-93359200	Enhancers	Fetal Intestine Large	intestine
43	chr10:93352000-93353600	Enhancers	Placenta	Placenta
44	chr10:93352200-93353400	Enhancers	Fetal Kidney	kidney
45	chr10:93352200-93355800	Weak transcription	HUVEC	blood vessel
46	chr10:93352200-93356200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:93352200-93356200	Weak transcription	Osteobl	bone
48	chr10:93352400-93353200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr10:93352400-93353400	Enhancers	Left Ventricle	heart
50	chr10:93352400-93353600	Enhancers	Small Intestine	intestine

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