Variant report

Variant	rs4933676
Chromosome Location	chr10:93367341-93367342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
3	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
4	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
5	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
6	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1329655	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60185155	0.87[ASN][1000 genomes]
rs7076799	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894250	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897040	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899167	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4933676	TNKS2	cis	parietal	SCAN
rs4933676	TMEM20	cis	cerebellum	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:93361000-93367400	Weak transcription	Psoas Muscle	Psoas
5	chr10:93362800-93367600	Weak transcription	Right Ventricle	heart
6	chr10:93363800-93367400	Weak transcription	Pancreas	Pancrea
7	chr10:93363800-93367600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:93364000-93367400	Weak transcription	Aorta	Aorta
9	chr10:93364000-93367400	Weak transcription	Right Atrium	heart
10	chr10:93364000-93367800	Weak transcription	Stomach Mucosa	stomach
11	chr10:93364200-93367400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:93364400-93367400	Weak transcription	Ovary	ovary
13	chr10:93364600-93368400	Weak transcription	Gastric	stomach
14	chr10:93364800-93367400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93364800-93367400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:93364800-93367400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:93365200-93367600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:93365400-93367400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:93365400-93367400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93365400-93367400	Weak transcription	Fetal Kidney	kidney
21	chr10:93365400-93367400	Weak transcription	Fetal Lung	lung
22	chr10:93365400-93367800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:93365600-93367400	Weak transcription	HSMM	muscle
24	chr10:93365600-93367400	Weak transcription	NHLF	lung
25	chr10:93365600-93367400	Weak transcription	Osteobl	bone
26	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:93366200-93367400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:93366200-93367400	Weak transcription	NHDF-Ad	bronchial
29	chr10:93367200-93367400	Enhancers	Fetal Heart	heart
30	chr10:93367200-93367400	Enhancers	Hela-S3	cervix
31	chr10:93367200-93367400	Enhancers	HSMMtube	muscle
32	chr10:93367200-93367400	Enhancers	K562	blood
33	chr10:93367200-93367600	Enhancers	Stomach Smooth Muscle	stomach
34	chr10:93367200-93367800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:93367200-93367800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:93367200-93368000	Enhancers	Rectal Smooth Muscle	rectum
37	chr10:93367200-93368200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:93367200-93368200	Enhancers	Adipose Nuclei	Adipose
39	chr10:93367200-93368400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:93367200-93368400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr10:93367200-93368400	Enhancers	Colon Smooth Muscle	Colon
42	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach

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