Variant report

Variant	rs13297848
Chromosome Location	chr9:3299730-3299731
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12340705	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892086	chr9:3012276-3410838	Bivalent Enhancer ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1032921	chr9:3139007-3502815	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539940	chr9:3139007-3502815	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv466090	chr9:3237378-3349487	Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv613145	chr9:3237378-3349487	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1032529	chr9:3254763-3319778	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv539941	chr9:3254763-3319778	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv531566	chr9:3288211-3545454	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv892089	chr9:3290569-3578094	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3244200-3338400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:3265600-3332000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:3272000-3302800	Weak transcription	Ovary	ovary
4	chr9:3277400-3310600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:3277400-3337400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:3286600-3307000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:3288000-3305600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:3288200-3309000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:3288200-3378400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr9:3288600-3318800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:3290800-3309200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:3291400-3338600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:3291800-3318800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:3292000-3300000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:3293200-3329600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:3293400-3299800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:3293400-3312800	Weak transcription	Primary T cells from cord blood	blood
18	chr9:3293400-3312800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:3293400-3318800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr9:3293600-3301400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:3293600-3352600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:3294800-3321200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:3297000-3312600	Weak transcription	Aorta	Aorta
24	chr9:3299200-3300800	Enhancers	Primary B cells from cord blood	blood
25	chr9:3299200-3301400	Enhancers	GM12878-XiMat	blood
26	chr9:3299400-3300200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr9:3299400-3301200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr9:3299600-3300000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr9:3299600-3300200	Enhancers	Monocytes-CD14+_RO01746	blood

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