Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96780349..96783883-chr9:96791469..96794571,5	MCF-7	breast:
2	chr9:96781040..96783719-chr9:96928515..96930233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000269946	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10117457	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10123954	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10429556	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10429603	0.82[EUR][1000 genomes]
rs10435922	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10435924	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761313	0.82[EUR][1000 genomes]
rs10821284	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821285	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993037	0.82[EUR][1000 genomes]
rs1576640	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2026917	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2150625	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744308	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744310	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7033898	0.83[EUR][1000 genomes]
rs7045643	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7858069	0.81[EUR][1000 genomes]
rs914295	0.84[EUR][1000 genomes]
rs914297	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9299414	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3426132	chr9:96782446-96794518	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96780800-96788400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:96782200-96788600	Weak transcription	Esophagus	oesophagus

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